Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00520

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00515 and AMB_RS00520 are separated by 11 nucleotidesAMB_RS00520 and AMB_RS00525 are separated by 5 nucleotides AMB_RS00515: AMB_RS00515 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 117,353 to 118,456 _RS00515 AMB_RS00520: AMB_RS00520 - SIS domain-containing protein, at 118,468 to 119,088 _RS00520 AMB_RS00525: AMB_RS00525 - O-antigen ligase family protein, at 119,094 to 120,392 _RS00525 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1at 118.504 kb on - strandat 118.504 kb on - strandat 118.504 kb on - strandat 118.504 kb on - strandat 119.089 kb on - strandat 119.089 kb on - strandat 119.096 kb on - strandat 119.096 kb on - strandat 119.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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118,504 - -1.3
118,504 - +0.0
118,504 - -1.7
118,504 - -1.3
119,089 - +0.3
119,089 - -1.7
119,096 - -0.0
119,096 - -1.5
119,125 - -0.5

Or see this region's nucleotide sequence