Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00375

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00370 and AMB_RS00375 overlap by 4 nucleotidesAMB_RS00375 and AMB_RS00380 are separated by 85 nucleotides AMB_RS00370: AMB_RS00370 - hypothetical protein, at 80,191 to 82,155 _RS00370 AMB_RS00375: AMB_RS00375 - acetyltransferase, at 82,152 to 83,264 _RS00375 AMB_RS00380: AMB_RS00380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 83,350 to 84,480 _RS00380 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1at 83.289 kb on + strandat 83.307 kb on + strandat 83.367 kb on + strandat 83.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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83,289 + -1.3
83,307 + -1.7
83,367 + +0.3
83,367 + -0.7

Or see this region's nucleotide sequence