Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00295

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23085 and AMB_RS00295 are separated by 7 nucleotidesAMB_RS00295 and AMB_RS00300 overlap by 4 nucleotidesAMB_RS00300 and AMB_RS00305 overlap by 4 nucleotides AMB_RS23085: AMB_RS23085 - glycosyltransferase family 2 protein, at 63,025 to 64,062 _RS23085 AMB_RS00295: AMB_RS00295 - dTDP-glucose 4,6-dehydratase, at 64,070 to 65,188 _RS00295 AMB_RS00300: AMB_RS00300 - glucose-1-phosphate thymidylyltransferase, at 65,185 to 66,075 _RS00300 AMB_RS00305: AMB_RS00305 - ABC transporter ATP-binding protein, at 66,072 to 67,868 _RS00305 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1at 64.060 kb on + strandat 64.060 kb on + strandat 64.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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64,060 + +0.3
64,060 + -3.0
64,060 + -0.4

Or see this region's nucleotide sequence