Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00245

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00235 and AMB_RS00240 are separated by 186 nucleotidesAMB_RS00240 and AMB_RS00245 overlap by 1 nucleotidesAMB_RS00245 and AMB_RS00250 are separated by 69 nucleotidesAMB_RS00250 and AMB_RS00255 are separated by 3 nucleotides AMB_RS00235: AMB_RS00235 - radical SAM protein, at 53,514 to 54,716 _RS00235 AMB_RS00240: AMB_RS00240 - hypothetical protein, at 54,903 to 55,520 _RS00240 AMB_RS00245: AMB_RS00245 - transcriptional activator RfaH, at 55,520 to 56,023 _RS00245 AMB_RS00250: AMB_RS00250 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 56,093 to 56,677 _RS00250 AMB_RS00255: AMB_RS00255 - methyltransferase, TIGR04325 family, at 56,681 to 57,454 _RS00255 Position (kb) 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 54.759 kb on - strandat 55.089 kb on + strand, within AMB_RS00240at 55.089 kb on + strand, within AMB_RS00240at 55.089 kb on + strand, within AMB_RS00240at 55.089 kb on + strand, within AMB_RS00240at 55.089 kb on + strand, within AMB_RS00240at 55.089 kb on + strand, within AMB_RS00240at 55.092 kb on + strand, within AMB_RS00240at 55.604 kb on + strand, within AMB_RS00245at 55.604 kb on + strand, within AMB_RS00245at 55.604 kb on + strand, within AMB_RS00245at 55.604 kb on + strand, within AMB_RS00245at 55.616 kb on + strand, within AMB_RS00245at 55.732 kb on + strand, within AMB_RS00245at 56.089 kb on + strandat 56.116 kb on - strandat 56.398 kb on + strand, within AMB_RS00250at 56.482 kb on + strand, within AMB_RS00250at 56.482 kb on + strand, within AMB_RS00250at 56.513 kb on + strand, within AMB_RS00250at 56.513 kb on + strand, within AMB_RS00250at 56.513 kb on + strand, within AMB_RS00250at 56.513 kb on + strand, within AMB_RS00250at 56.513 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.531 kb on + strand, within AMB_RS00250at 56.695 kb on + strandat 56.695 kb on + strandat 56.711 kb on + strandat 56.711 kb on + strandat 56.711 kb on + strandat 56.711 kb on + strandat 56.712 kb on - strandat 56.843 kb on + strand, within AMB_RS00255at 56.843 kb on + strand, within AMB_RS00255at 56.843 kb on + strand, within AMB_RS00255at 56.843 kb on + strand, within AMB_RS00255at 56.844 kb on - strand, within AMB_RS00255at 56.844 kb on - strand, within AMB_RS00255at 56.873 kb on + strand, within AMB_RS00255at 56.873 kb on + strand, within AMB_RS00255at 56.873 kb on + strand, within AMB_RS00255at 56.874 kb on - strand, within AMB_RS00255at 56.874 kb on - strand, within AMB_RS00255at 56.874 kb on - strand, within AMB_RS00255at 56.930 kb on + strand, within AMB_RS00255at 56.930 kb on + strand, within AMB_RS00255at 56.930 kb on + strand, within AMB_RS00255at 56.931 kb on - strand, within AMB_RS00255at 56.931 kb on - strand, within AMB_RS00255at 56.931 kb on - strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.984 kb on + strand, within AMB_RS00255at 56.985 kb on - strand, within AMB_RS00255at 56.985 kb on - strand, within AMB_RS00255at 56.985 kb on - strand, within AMB_RS00255at 56.985 kb on - strand, within AMB_RS00255at 56.985 kb on - strand, within AMB_RS00255at 56.986 kb on + strand, within AMB_RS00255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
54,759 - -0.7
55,089 + AMB_RS00240 0.30 -1.7
55,089 + AMB_RS00240 0.30 +0.3
55,089 + AMB_RS00240 0.30 -0.7
55,089 + AMB_RS00240 0.30 +0.3
55,089 + AMB_RS00240 0.30 -2.0
55,089 + AMB_RS00240 0.30 -1.7
55,092 + AMB_RS00240 0.31 +0.3
55,604 + AMB_RS00245 0.17 -1.7
55,604 + AMB_RS00245 0.17 -2.5
55,604 + AMB_RS00245 0.17 -1.7
55,604 + AMB_RS00245 0.17 -1.3
55,616 + AMB_RS00245 0.19 +0.3
55,732 + AMB_RS00245 0.42 -1.5
56,089 + -0.7
56,116 - +0.3
56,398 + AMB_RS00250 0.52 -1.3
56,482 + AMB_RS00250 0.66 -0.3
56,482 + AMB_RS00250 0.66 -2.8
56,513 + AMB_RS00250 0.72 -0.7
56,513 + AMB_RS00250 0.72 -0.7
56,513 + AMB_RS00250 0.72 -0.3
56,513 + AMB_RS00250 0.72 -0.7
56,513 + AMB_RS00250 0.72 -0.6
56,531 + AMB_RS00250 0.75 -2.0
56,531 + AMB_RS00250 0.75 -1.7
56,531 + AMB_RS00250 0.75 +0.1
56,531 + AMB_RS00250 0.75 -0.7
56,531 + AMB_RS00250 0.75 +0.3
56,531 + AMB_RS00250 0.75 -1.7
56,531 + AMB_RS00250 0.75 -2.8
56,695 + -0.9
56,695 + -2.8
56,711 + -3.3
56,711 + +0.3
56,711 + +0.3
56,711 + +0.3
56,712 - -2.3
56,843 + AMB_RS00255 0.21 +0.3
56,843 + AMB_RS00255 0.21 -2.0
56,843 + AMB_RS00255 0.21 -0.7
56,843 + AMB_RS00255 0.21 -3.5
56,844 - AMB_RS00255 0.21 -0.8
56,844 - AMB_RS00255 0.21 +0.3
56,873 + AMB_RS00255 0.25 +0.1
56,873 + AMB_RS00255 0.25 -2.0
56,873 + AMB_RS00255 0.25 +0.3
56,874 - AMB_RS00255 0.25 -0.7
56,874 - AMB_RS00255 0.25 -2.7
56,874 - AMB_RS00255 0.25 -0.4
56,930 + AMB_RS00255 0.32 -0.7
56,930 + AMB_RS00255 0.32 +0.3
56,930 + AMB_RS00255 0.32 -3.9
56,931 - AMB_RS00255 0.32 -2.0
56,931 - AMB_RS00255 0.32 -1.3
56,931 - AMB_RS00255 0.32 -1.1
56,984 + AMB_RS00255 0.39 -2.3
56,984 + AMB_RS00255 0.39 -0.7
56,984 + AMB_RS00255 0.39 -1.7
56,984 + AMB_RS00255 0.39 -3.6
56,984 + AMB_RS00255 0.39 +0.2
56,984 + AMB_RS00255 0.39 -2.3
56,984 + AMB_RS00255 0.39 +0.3
56,985 - AMB_RS00255 0.39 -3.5
56,985 - AMB_RS00255 0.39 +0.3
56,985 - AMB_RS00255 0.39 -1.3
56,985 - AMB_RS00255 0.39 +0.3
56,985 - AMB_RS00255 0.39 -1.0
56,986 + AMB_RS00255 0.39 -2.3

Or see this region's nucleotide sequence