Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00185

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00180 and AMB_RS00185 are separated by 23 nucleotidesAMB_RS00185 and AMB_RS00190 overlap by 13 nucleotides AMB_RS00180: AMB_RS00180 - hypothetical protein, at 39,159 to 40,997 _RS00180 AMB_RS00185: AMB_RS00185 - hypothetical protein, at 41,021 to 42,601 _RS00185 AMB_RS00190: AMB_RS00190 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 42,589 to 43,983 _RS00190 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1at 40.145 kb on + strand, within AMB_RS00180at 40.145 kb on + strand, within AMB_RS00180at 40.596 kb on + strand, within AMB_RS00180at 40.597 kb on - strand, within AMB_RS00180at 40.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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40,145 + AMB_RS00180 0.54 -0.4
40,145 + AMB_RS00180 0.54 -0.7
40,596 + AMB_RS00180 0.78 +0.3
40,597 - AMB_RS00180 0.78 -0.2
40,971 + -0.7

Or see this region's nucleotide sequence