Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00145

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00135 and AMB_RS00140 are separated by 270 nucleotidesAMB_RS00140 and AMB_RS00145 are separated by 75 nucleotidesAMB_RS00145 and AMB_RS00150 overlap by 14 nucleotidesAMB_RS00150 and AMB_RS00155 overlap by 4 nucleotides AMB_RS00135: AMB_RS00135 - porin, at 25,496 to 26,845 _RS00135 AMB_RS00140: AMB_RS00140 - DUF3576 domain-containing protein, at 27,116 to 27,646 _RS00140 AMB_RS00145: AMB_RS00145 - leucine--tRNA ligase, at 27,722 to 30,310 _RS00145 AMB_RS00150: AMB_RS00150 - hypothetical protein, at 30,297 to 30,872 _RS00150 AMB_RS00155: AMB_RS00155 - DNA polymerase III subunit delta, at 30,869 to 31,891 _RS00155 Position (kb) 27 28 29 30 31Strain fitness (log2 ratio) -1 0 1at 27.689 kb on + strandat 27.689 kb on + strandat 27.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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27,689 + +0.3
27,689 + +0.3
27,689 + +0.3

Or see this region's nucleotide sequence