Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22595

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS22580 and ABIE41_RS22585 are separated by 154 nucleotidesABIE41_RS22585 and ABIE41_RS22590 are separated by 28 nucleotidesABIE41_RS22590 and ABIE41_RS22595 are separated by 176 nucleotidesABIE41_RS22595 and ABIE41_RS22600 are separated by 222 nucleotides ABIE41_RS22580: ABIE41_RS22580 - TIGR00730 family Rossman fold protein, at 4,648,389 to 4,649,168 _RS22580 ABIE41_RS22585: ABIE41_RS22585 - 50S ribosomal protein L20, at 4,649,323 to 4,649,703 _RS22585 ABIE41_RS22590: ABIE41_RS22590 - 50S ribosomal protein L35, at 4,649,732 to 4,649,932 _RS22590 ABIE41_RS22595: ABIE41_RS22595 - chemotaxis protein CheW, at 4,650,109 to 4,652,679 _RS22595 ABIE41_RS22600: ABIE41_RS22600 - DUF1176 domain-containing protein, at 4,652,902 to 4,653,957 _RS22600 Position (kb) 4650 4651 4652 4653Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4649.166 kb on + strandat 4649.166 kb on + strandat 4649.166 kb on + strandat 4649.166 kb on + strandat 4649.167 kb on - strandat 4649.167 kb on - strandat 4649.167 kb on - strandat 4649.238 kb on + strandat 4649.946 kb on - strandat 4649.946 kb on - strandat 4650.021 kb on - strandat 4650.111 kb on - strandat 4650.452 kb on + strand, within ABIE41_RS22595at 4650.452 kb on + strand, within ABIE41_RS22595at 4650.453 kb on - strand, within ABIE41_RS22595at 4650.453 kb on - strand, within ABIE41_RS22595at 4650.731 kb on + strand, within ABIE41_RS22595at 4650.732 kb on - strand, within ABIE41_RS22595at 4651.061 kb on + strand, within ABIE41_RS22595at 4651.085 kb on + strand, within ABIE41_RS22595at 4651.085 kb on + strand, within ABIE41_RS22595at 4651.085 kb on + strand, within ABIE41_RS22595at 4651.086 kb on - strand, within ABIE41_RS22595at 4651.086 kb on - strand, within ABIE41_RS22595at 4651.086 kb on - strand, within ABIE41_RS22595at 4651.086 kb on - strand, within ABIE41_RS22595at 4651.086 kb on - strand, within ABIE41_RS22595at 4651.118 kb on + strand, within ABIE41_RS22595at 4651.118 kb on + strand, within ABIE41_RS22595at 4651.118 kb on + strand, within ABIE41_RS22595at 4651.119 kb on - strand, within ABIE41_RS22595at 4651.119 kb on - strand, within ABIE41_RS22595at 4651.253 kb on + strand, within ABIE41_RS22595at 4651.263 kb on - strand, within ABIE41_RS22595at 4651.263 kb on - strand, within ABIE41_RS22595at 4651.351 kb on + strand, within ABIE41_RS22595at 4651.352 kb on - strand, within ABIE41_RS22595at 4651.385 kb on + strand, within ABIE41_RS22595at 4651.386 kb on - strand, within ABIE41_RS22595at 4651.386 kb on - strand, within ABIE41_RS22595at 4651.537 kb on + strand, within ABIE41_RS22595at 4651.537 kb on + strand, within ABIE41_RS22595at 4651.537 kb on + strand, within ABIE41_RS22595at 4651.537 kb on + strand, within ABIE41_RS22595at 4651.537 kb on + strand, within ABIE41_RS22595at 4651.538 kb on - strand, within ABIE41_RS22595at 4651.538 kb on - strand, within ABIE41_RS22595at 4651.538 kb on - strand, within ABIE41_RS22595at 4651.538 kb on - strand, within ABIE41_RS22595at 4651.538 kb on - strand, within ABIE41_RS22595at 4651.791 kb on + strand, within ABIE41_RS22595at 4651.791 kb on + strand, within ABIE41_RS22595at 4651.791 kb on + strand, within ABIE41_RS22595at 4651.792 kb on - strand, within ABIE41_RS22595at 4651.792 kb on - strand, within ABIE41_RS22595at 4651.792 kb on - strand, within ABIE41_RS22595at 4651.793 kb on + strand, within ABIE41_RS22595at 4651.794 kb on - strand, within ABIE41_RS22595at 4651.794 kb on - strand, within ABIE41_RS22595at 4651.794 kb on - strand, within ABIE41_RS22595at 4651.794 kb on - strand, within ABIE41_RS22595at 4651.832 kb on + strand, within ABIE41_RS22595at 4651.832 kb on + strand, within ABIE41_RS22595at 4651.833 kb on - strand, within ABIE41_RS22595at 4652.041 kb on + strand, within ABIE41_RS22595at 4652.041 kb on + strand, within ABIE41_RS22595at 4652.042 kb on - strand, within ABIE41_RS22595at 4652.042 kb on - strand, within ABIE41_RS22595at 4652.084 kb on + strand, within ABIE41_RS22595at 4652.084 kb on + strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.126 kb on + strand, within ABIE41_RS22595at 4652.126 kb on + strand, within ABIE41_RS22595at 4652.139 kb on - strand, within ABIE41_RS22595at 4652.139 kb on - strand, within ABIE41_RS22595at 4652.255 kb on + strand, within ABIE41_RS22595at 4652.255 kb on + strand, within ABIE41_RS22595at 4652.264 kb on + strand, within ABIE41_RS22595at 4652.265 kb on - strand, within ABIE41_RS22595at 4652.276 kb on + strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.682 kb on + strandat 4652.683 kb on - strandat 4653.023 kb on + strand, within ABIE41_RS22600at 4653.023 kb on + strand, within ABIE41_RS22600at 4653.023 kb on + strand, within ABIE41_RS22600at 4653.024 kb on - strand, within ABIE41_RS22600at 4653.024 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.200 kb on + strand, within ABIE41_RS22600at 4653.200 kb on + strand, within ABIE41_RS22600at 4653.201 kb on - strand, within ABIE41_RS22600at 4653.296 kb on - strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.371 kb on + strand, within ABIE41_RS22600at 4653.627 kb on - strand, within ABIE41_RS22600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
4,649,166 + -0.2
4,649,166 + +0.0
4,649,166 + +0.5
4,649,166 + +2.0
4,649,167 - +1.5
4,649,167 - +1.0
4,649,167 - +1.5
4,649,238 + -0.2
4,649,946 - +0.6
4,649,946 - -1.1
4,650,021 - -0.1
4,650,111 - +0.1
4,650,452 + ABIE41_RS22595 0.13 -0.2
4,650,452 + ABIE41_RS22595 0.13 -0.9
4,650,453 - ABIE41_RS22595 0.13 -0.3
4,650,453 - ABIE41_RS22595 0.13 -0.5
4,650,731 + ABIE41_RS22595 0.24 -0.4
4,650,732 - ABIE41_RS22595 0.24 -0.6
4,651,061 + ABIE41_RS22595 0.37 -0.1
4,651,085 + ABIE41_RS22595 0.38 -0.3
4,651,085 + ABIE41_RS22595 0.38 -1.1
4,651,085 + ABIE41_RS22595 0.38 +1.5
4,651,086 - ABIE41_RS22595 0.38 +0.5
4,651,086 - ABIE41_RS22595 0.38 -1.4
4,651,086 - ABIE41_RS22595 0.38 +0.0
4,651,086 - ABIE41_RS22595 0.38 +0.6
4,651,086 - ABIE41_RS22595 0.38 -0.9
4,651,118 + ABIE41_RS22595 0.39 -1.5
4,651,118 + ABIE41_RS22595 0.39 -0.3
4,651,118 + ABIE41_RS22595 0.39 +0.2
4,651,119 - ABIE41_RS22595 0.39 -0.0
4,651,119 - ABIE41_RS22595 0.39 -1.7
4,651,253 + ABIE41_RS22595 0.44 +1.3
4,651,263 - ABIE41_RS22595 0.45 +0.2
4,651,263 - ABIE41_RS22595 0.45 -0.8
4,651,351 + ABIE41_RS22595 0.48 -1.2
4,651,352 - ABIE41_RS22595 0.48 +0.1
4,651,385 + ABIE41_RS22595 0.50 +2.3
4,651,386 - ABIE41_RS22595 0.50 +0.6
4,651,386 - ABIE41_RS22595 0.50 -0.9
4,651,537 + ABIE41_RS22595 0.56 +1.0
4,651,537 + ABIE41_RS22595 0.56 -1.9
4,651,537 + ABIE41_RS22595 0.56 +0.7
4,651,537 + ABIE41_RS22595 0.56 -0.3
4,651,537 + ABIE41_RS22595 0.56 -0.0
4,651,538 - ABIE41_RS22595 0.56 +0.2
4,651,538 - ABIE41_RS22595 0.56 +0.3
4,651,538 - ABIE41_RS22595 0.56 -1.1
4,651,538 - ABIE41_RS22595 0.56 +0.7
4,651,538 - ABIE41_RS22595 0.56 -0.2
4,651,791 + ABIE41_RS22595 0.65 +0.4
4,651,791 + ABIE41_RS22595 0.65 +0.2
4,651,791 + ABIE41_RS22595 0.65 -0.3
4,651,792 - ABIE41_RS22595 0.65 +0.1
4,651,792 - ABIE41_RS22595 0.65 -0.2
4,651,792 - ABIE41_RS22595 0.65 -0.5
4,651,793 + ABIE41_RS22595 0.65 -0.5
4,651,794 - ABIE41_RS22595 0.66 +0.2
4,651,794 - ABIE41_RS22595 0.66 -0.3
4,651,794 - ABIE41_RS22595 0.66 -0.7
4,651,794 - ABIE41_RS22595 0.66 -0.5
4,651,832 + ABIE41_RS22595 0.67 -0.4
4,651,832 + ABIE41_RS22595 0.67 +0.2
4,651,833 - ABIE41_RS22595 0.67 +0.1
4,652,041 + ABIE41_RS22595 0.75 +0.1
4,652,041 + ABIE41_RS22595 0.75 +0.7
4,652,042 - ABIE41_RS22595 0.75 -0.3
4,652,042 - ABIE41_RS22595 0.75 -0.2
4,652,084 + ABIE41_RS22595 0.77 +0.5
4,652,084 + ABIE41_RS22595 0.77 +0.7
4,652,085 - ABIE41_RS22595 0.77 -0.5
4,652,085 - ABIE41_RS22595 0.77 -0.2
4,652,085 - ABIE41_RS22595 0.77 -0.4
4,652,085 - ABIE41_RS22595 0.77 +2.3
4,652,126 + ABIE41_RS22595 0.78 +0.7
4,652,126 + ABIE41_RS22595 0.78 -1.1
4,652,139 - ABIE41_RS22595 0.79 +0.7
4,652,139 - ABIE41_RS22595 0.79 +0.0
4,652,255 + ABIE41_RS22595 0.83 -0.0
4,652,255 + ABIE41_RS22595 0.83 -1.2
4,652,264 + ABIE41_RS22595 0.84 -0.2
4,652,265 - ABIE41_RS22595 0.84 +0.4
4,652,276 + ABIE41_RS22595 0.84 -1.0
4,652,277 - ABIE41_RS22595 0.84 +0.0
4,652,277 - ABIE41_RS22595 0.84 +0.5
4,652,277 - ABIE41_RS22595 0.84 +0.3
4,652,277 - ABIE41_RS22595 0.84 -1.1
4,652,682 + -0.1
4,652,683 - +0.7
4,653,023 + ABIE41_RS22600 0.11 -2.2
4,653,023 + ABIE41_RS22600 0.11 -0.7
4,653,023 + ABIE41_RS22600 0.11 -0.0
4,653,024 - ABIE41_RS22600 0.12 +0.2
4,653,024 - ABIE41_RS22600 0.12 +0.0
4,653,189 - ABIE41_RS22600 0.27 -0.3
4,653,189 - ABIE41_RS22600 0.27 -0.5
4,653,189 - ABIE41_RS22600 0.27 -0.7
4,653,189 - ABIE41_RS22600 0.27 -0.3
4,653,200 + ABIE41_RS22600 0.28 -3.0
4,653,200 + ABIE41_RS22600 0.28 -1.5
4,653,201 - ABIE41_RS22600 0.28 +0.2
4,653,296 - ABIE41_RS22600 0.37 -1.4
4,653,297 + ABIE41_RS22600 0.37 -0.8
4,653,297 + ABIE41_RS22600 0.37 -0.5
4,653,297 + ABIE41_RS22600 0.37 -0.4
4,653,371 + ABIE41_RS22600 0.44 -0.4
4,653,627 - ABIE41_RS22600 0.69 -0.6

Or see this region's nucleotide sequence