Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21365 and ABIE41_RS21370 are separated by 28 nucleotides ABIE41_RS21370 and ABIE41_RS21375 are separated by 108 nucleotides ABIE41_RS21375 and ABIE41_RS21380 are separated by 72 nucleotides ABIE41_RS21380 and ABIE41_RS21385 are separated by 71 nucleotides
ABIE41_RS21365: ABIE41_RS21365 - urease accessory protein UreE, at 4,389,985 to 4,390,704
_RS21365
ABIE41_RS21370: ABIE41_RS21370 - putative quinol monooxygenase, at 4,390,733 to 4,391,020
_RS21370
ABIE41_RS21375: ABIE41_RS21375 - ABC transporter substrate-binding protein, at 4,391,129 to 4,392,166
_RS21375
ABIE41_RS21380: ABIE41_RS21380 - hypothetical protein, at 4,392,239 to 4,392,490
_RS21380
ABIE41_RS21385: ABIE41_RS21385 - urease subunit alpha, at 4,392,562 to 4,394,298
_RS21385
Position (kb) 4391
4392
4393 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4390.280 kb on + strand, within ABIE41_RS21365 at 4390.375 kb on - strand, within ABIE41_RS21365 at 4390.376 kb on + strand, within ABIE41_RS21365 at 4390.376 kb on + strand, within ABIE41_RS21365 at 4390.376 kb on + strand, within ABIE41_RS21365 at 4390.376 kb on + strand, within ABIE41_RS21365 at 4390.376 kb on + strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.377 kb on - strand, within ABIE41_RS21365 at 4390.407 kb on + strand, within ABIE41_RS21365 at 4390.407 kb on + strand, within ABIE41_RS21365 at 4390.408 kb on - strand, within ABIE41_RS21365 at 4390.422 kb on + strand, within ABIE41_RS21365 at 4390.645 kb on - strand at 4390.712 kb on - strand at 4390.712 kb on - strand at 4390.921 kb on - strand, within ABIE41_RS21370 at 4391.214 kb on + strand at 4391.214 kb on + strand at 4391.214 kb on + strand at 4391.214 kb on + strand at 4391.406 kb on + strand, within ABIE41_RS21375 at 4391.547 kb on + strand, within ABIE41_RS21375 at 4391.550 kb on - strand, within ABIE41_RS21375 at 4391.580 kb on + strand, within ABIE41_RS21375 at 4391.581 kb on - strand, within ABIE41_RS21375 at 4391.581 kb on - strand, within ABIE41_RS21375 at 4391.634 kb on + strand, within ABIE41_RS21375 at 4391.634 kb on + strand, within ABIE41_RS21375 at 4391.634 kb on + strand, within ABIE41_RS21375 at 4391.634 kb on + strand, within ABIE41_RS21375 at 4391.634 kb on + strand, within ABIE41_RS21375 at 4391.635 kb on - strand, within ABIE41_RS21375 at 4391.635 kb on - strand, within ABIE41_RS21375 at 4391.635 kb on - strand, within ABIE41_RS21375 at 4391.635 kb on - strand, within ABIE41_RS21375 at 4391.754 kb on + strand, within ABIE41_RS21375 at 4391.754 kb on + strand, within ABIE41_RS21375 at 4391.755 kb on - strand, within ABIE41_RS21375 at 4391.755 kb on - strand, within ABIE41_RS21375 at 4391.778 kb on + strand, within ABIE41_RS21375 at 4391.779 kb on - strand, within ABIE41_RS21375 at 4391.779 kb on - strand, within ABIE41_RS21375 at 4391.779 kb on - strand, within ABIE41_RS21375 at 4391.779 kb on - strand, within ABIE41_RS21375 at 4391.779 kb on - strand, within ABIE41_RS21375 at 4391.859 kb on + strand, within ABIE41_RS21375 at 4391.859 kb on + strand, within ABIE41_RS21375 at 4391.860 kb on - strand, within ABIE41_RS21375 at 4391.860 kb on - strand, within ABIE41_RS21375 at 4391.860 kb on - strand, within ABIE41_RS21375 at 4391.964 kb on + strand, within ABIE41_RS21375 at 4391.964 kb on + strand, within ABIE41_RS21375 at 4391.964 kb on + strand, within ABIE41_RS21375 at 4391.965 kb on - strand, within ABIE41_RS21375 at 4391.965 kb on - strand, within ABIE41_RS21375 at 4391.965 kb on - strand, within ABIE41_RS21375 at 4391.965 kb on - strand, within ABIE41_RS21375 at 4392.067 kb on - strand at 4392.202 kb on - strand at 4392.305 kb on + strand, within ABIE41_RS21380 at 4392.306 kb on - strand, within ABIE41_RS21380 at 4392.306 kb on - strand, within ABIE41_RS21380 at 4392.306 kb on - strand, within ABIE41_RS21380 at 4392.306 kb on - strand, within ABIE41_RS21380 at 4392.575 kb on + strand at 4392.575 kb on + strand at 4392.576 kb on - strand at 4392.576 kb on - strand at 4392.644 kb on + strand at 4392.644 kb on + strand at 4392.644 kb on + strand at 4392.644 kb on + strand at 4392.645 kb on - strand at 4392.645 kb on - strand at 4392.645 kb on - strand at 4392.645 kb on - strand at 4392.645 kb on - strand at 4392.645 kb on - strand at 4393.050 kb on - strand, within ABIE41_RS21385 at 4393.061 kb on + strand, within ABIE41_RS21385 at 4393.061 kb on + strand, within ABIE41_RS21385 at 4393.061 kb on + strand, within ABIE41_RS21385 at 4393.062 kb on - strand, within ABIE41_RS21385 at 4393.062 kb on - strand, within ABIE41_RS21385
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,390,280 + ABIE41_RS21365 0.41 +0.0 4,390,375 - ABIE41_RS21365 0.54 +1.3 4,390,376 + ABIE41_RS21365 0.54 -0.0 4,390,376 + ABIE41_RS21365 0.54 -1.6 4,390,376 + ABIE41_RS21365 0.54 -1.4 4,390,376 + ABIE41_RS21365 0.54 +0.1 4,390,376 + ABIE41_RS21365 0.54 -0.4 4,390,377 - ABIE41_RS21365 0.54 -0.6 4,390,377 - ABIE41_RS21365 0.54 +0.5 4,390,377 - ABIE41_RS21365 0.54 -0.3 4,390,377 - ABIE41_RS21365 0.54 -2.5 4,390,377 - ABIE41_RS21365 0.54 -0.3 4,390,377 - ABIE41_RS21365 0.54 +0.2 4,390,407 + ABIE41_RS21365 0.59 -0.7 4,390,407 + ABIE41_RS21365 0.59 -0.0 4,390,408 - ABIE41_RS21365 0.59 +0.1 4,390,422 + ABIE41_RS21365 0.61 +0.7 4,390,645 - -0.7 4,390,712 - -0.9 4,390,712 - +0.6 4,390,921 - ABIE41_RS21370 0.65 -0.4 4,391,214 + +0.4 4,391,214 + +0.4 4,391,214 + +0.1 4,391,214 + +0.0 4,391,406 + ABIE41_RS21375 0.27 +0.2 4,391,547 + ABIE41_RS21375 0.40 -0.2 4,391,550 - ABIE41_RS21375 0.41 -1.5 4,391,580 + ABIE41_RS21375 0.43 +0.1 4,391,581 - ABIE41_RS21375 0.44 -0.2 4,391,581 - ABIE41_RS21375 0.44 -0.4 4,391,634 + ABIE41_RS21375 0.49 -0.9 4,391,634 + ABIE41_RS21375 0.49 +1.4 4,391,634 + ABIE41_RS21375 0.49 +0.1 4,391,634 + ABIE41_RS21375 0.49 +1.4 4,391,634 + ABIE41_RS21375 0.49 +0.4 4,391,635 - ABIE41_RS21375 0.49 +2.4 4,391,635 - ABIE41_RS21375 0.49 -0.6 4,391,635 - ABIE41_RS21375 0.49 -0.6 4,391,635 - ABIE41_RS21375 0.49 -0.1 4,391,754 + ABIE41_RS21375 0.60 +0.0 4,391,754 + ABIE41_RS21375 0.60 +1.4 4,391,755 - ABIE41_RS21375 0.60 +0.9 4,391,755 - ABIE41_RS21375 0.60 +0.1 4,391,778 + ABIE41_RS21375 0.63 +1.6 4,391,779 - ABIE41_RS21375 0.63 -0.2 4,391,779 - ABIE41_RS21375 0.63 +0.4 4,391,779 - ABIE41_RS21375 0.63 -0.6 4,391,779 - ABIE41_RS21375 0.63 +1.8 4,391,779 - ABIE41_RS21375 0.63 -0.1 4,391,859 + ABIE41_RS21375 0.70 -0.2 4,391,859 + ABIE41_RS21375 0.70 +0.3 4,391,860 - ABIE41_RS21375 0.70 -0.3 4,391,860 - ABIE41_RS21375 0.70 +0.4 4,391,860 - ABIE41_RS21375 0.70 -2.3 4,391,964 + ABIE41_RS21375 0.80 +1.2 4,391,964 + ABIE41_RS21375 0.80 +0.4 4,391,964 + ABIE41_RS21375 0.80 +0.1 4,391,965 - ABIE41_RS21375 0.81 -1.5 4,391,965 - ABIE41_RS21375 0.81 +0.1 4,391,965 - ABIE41_RS21375 0.81 -0.1 4,391,965 - ABIE41_RS21375 0.81 -0.4 4,392,067 - +0.4 4,392,202 - -0.3 4,392,305 + ABIE41_RS21380 0.26 +0.1 4,392,306 - ABIE41_RS21380 0.27 -0.6 4,392,306 - ABIE41_RS21380 0.27 +1.3 4,392,306 - ABIE41_RS21380 0.27 +0.2 4,392,306 - ABIE41_RS21380 0.27 -0.6 4,392,575 + +0.2 4,392,575 + -1.0 4,392,576 - -0.5 4,392,576 - +1.0 4,392,644 + +1.8 4,392,644 + -1.2 4,392,644 + +0.4 4,392,644 + -0.4 4,392,645 - +0.2 4,392,645 - +0.1 4,392,645 - +0.2 4,392,645 - -1.0 4,392,645 - +0.6 4,392,645 - -0.4 4,393,050 - ABIE41_RS21385 0.28 +1.1 4,393,061 + ABIE41_RS21385 0.29 -0.3 4,393,061 + ABIE41_RS21385 0.29 -0.7 4,393,061 + ABIE41_RS21385 0.29 -1.7 4,393,062 - ABIE41_RS21385 0.29 +0.9 4,393,062 - ABIE41_RS21385 0.29 +0.4
Or see this region's nucleotide sequence