Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20475

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS20470 and ABIE41_RS20475 are separated by 76 nucleotidesABIE41_RS20475 and ABIE41_RS20480 are separated by 86 nucleotidesABIE41_RS20480 and ABIE41_RS20485 are separated by 9 nucleotides ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944 _RS20470 ABIE41_RS20475: ABIE41_RS20475 - ROK family protein, at 4,209,021 to 4,210,241 _RS20475 ABIE41_RS20480: ABIE41_RS20480 - glucosamine-6-phosphate deaminase, at 4,210,328 to 4,211,071 _RS20480 ABIE41_RS20485: ABIE41_RS20485 - amidohydrolase family protein, at 4,211,081 to 4,212,151 _RS20485 Position (kb) 4209 4210 4211Strain fitness (log2 ratio) -2 -1 0 1 2at 4208.028 kb on - strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.195 kb on + strand, within ABIE41_RS20470at 4208.225 kb on + strand, within ABIE41_RS20470at 4208.226 kb on - strand, within ABIE41_RS20470at 4208.305 kb on + strand, within ABIE41_RS20470at 4208.418 kb on + strand, within ABIE41_RS20470at 4208.419 kb on - strand, within ABIE41_RS20470at 4208.576 kb on + strand, within ABIE41_RS20470at 4208.577 kb on - strand, within ABIE41_RS20470at 4208.577 kb on - strand, within ABIE41_RS20470at 4208.693 kb on + strand, within ABIE41_RS20470at 4208.693 kb on + strand, within ABIE41_RS20470at 4208.694 kb on - strand, within ABIE41_RS20470at 4208.964 kb on + strandat 4208.965 kb on - strandat 4210.538 kb on + strand, within ABIE41_RS20480at 4210.538 kb on + strand, within ABIE41_RS20480at 4210.539 kb on - strand, within ABIE41_RS20480at 4210.539 kb on - strand, within ABIE41_RS20480at 4210.784 kb on + strand, within ABIE41_RS20480at 4210.784 kb on + strand, within ABIE41_RS20480at 4210.784 kb on + strand, within ABIE41_RS20480at 4210.785 kb on - strand, within ABIE41_RS20480at 4210.785 kb on - strand, within ABIE41_RS20480at 4210.785 kb on - strand, within ABIE41_RS20480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
4,208,028 - ABIE41_RS20470 0.32 -0.0
4,208,087 + ABIE41_RS20470 0.36 -0.9
4,208,087 + ABIE41_RS20470 0.36 -1.9
4,208,088 - ABIE41_RS20470 0.36 +0.4
4,208,088 - ABIE41_RS20470 0.36 -0.3
4,208,088 - ABIE41_RS20470 0.36 -1.7
4,208,088 - ABIE41_RS20470 0.36 -0.3
4,208,088 - ABIE41_RS20470 0.36 -0.4
4,208,195 + ABIE41_RS20470 0.44 -0.2
4,208,225 + ABIE41_RS20470 0.47 -0.8
4,208,226 - ABIE41_RS20470 0.47 -0.2
4,208,305 + ABIE41_RS20470 0.52 +0.6
4,208,418 + ABIE41_RS20470 0.61 -1.2
4,208,419 - ABIE41_RS20470 0.61 +0.8
4,208,576 + ABIE41_RS20470 0.73 +1.8
4,208,577 - ABIE41_RS20470 0.73 -0.6
4,208,577 - ABIE41_RS20470 0.73 -1.4
4,208,693 + ABIE41_RS20470 0.81 -0.7
4,208,693 + ABIE41_RS20470 0.81 -0.2
4,208,694 - ABIE41_RS20470 0.81 -1.6
4,208,964 + -0.4
4,208,965 - +0.1
4,210,538 + ABIE41_RS20480 0.28 -1.0
4,210,538 + ABIE41_RS20480 0.28 -0.6
4,210,539 - ABIE41_RS20480 0.28 -1.4
4,210,539 - ABIE41_RS20480 0.28 +0.0
4,210,784 + ABIE41_RS20480 0.61 -1.7
4,210,784 + ABIE41_RS20480 0.61 +1.4
4,210,784 + ABIE41_RS20480 0.61 +0.2
4,210,785 - ABIE41_RS20480 0.61 +0.1
4,210,785 - ABIE41_RS20480 0.61 +0.2
4,210,785 - ABIE41_RS20480 0.61 -0.4

Or see this region's nucleotide sequence