Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08500

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08490 and ABIE41_RS08495 are separated by 158 nucleotidesABIE41_RS08495 and ABIE41_RS08500 are separated by 149 nucleotidesABIE41_RS08500 and ABIE41_RS08505 are separated by 150 nucleotides ABIE41_RS08490: ABIE41_RS08490 - hypothetical protein, at 1,752,197 to 1,752,649 _RS08490 ABIE41_RS08495: ABIE41_RS08495 - cold shock domain-containing protein, at 1,752,808 to 1,753,485 _RS08495 ABIE41_RS08500: ABIE41_RS08500 - Zn-dependent hydrolase, at 1,753,635 to 1,754,885 _RS08500 ABIE41_RS08505: ABIE41_RS08505 - phospholipase D-like domain-containing protein, at 1,755,036 to 1,756,316 _RS08505 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -2 -1 0 1 2at 1752.720 kb on + strandat 1752.816 kb on - strandat 1753.071 kb on - strand, within ABIE41_RS08495at 1753.432 kb on - strandat 1753.481 kb on + strandat 1753.481 kb on + strandat 1753.481 kb on + strandat 1753.481 kb on + strandat 1753.481 kb on + strandat 1753.482 kb on - strandat 1753.492 kb on + strandat 1753.531 kb on + strandat 1753.531 kb on + strandat 1753.531 kb on + strandat 1753.531 kb on + strandat 1753.531 kb on + strandat 1753.531 kb on + strandat 1753.532 kb on - strandat 1753.532 kb on - strandat 1753.532 kb on - strandat 1753.560 kb on + strandat 1753.792 kb on + strand, within ABIE41_RS08500at 1753.793 kb on - strand, within ABIE41_RS08500at 1753.793 kb on - strand, within ABIE41_RS08500at 1753.910 kb on + strand, within ABIE41_RS08500at 1753.911 kb on - strand, within ABIE41_RS08500at 1753.911 kb on - strand, within ABIE41_RS08500at 1753.954 kb on + strand, within ABIE41_RS08500at 1754.320 kb on + strand, within ABIE41_RS08500at 1754.321 kb on - strand, within ABIE41_RS08500at 1754.938 kb on + strandat 1754.939 kb on - strandat 1754.939 kb on - strandat 1754.939 kb on - strandat 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.880 kb on - strand, within ABIE41_RS08505at 1755.880 kb on - strand, within ABIE41_RS08505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,752,720 + +0.3
1,752,816 - -0.7
1,753,071 - ABIE41_RS08495 0.39 -0.3
1,753,432 - -0.5
1,753,481 + -1.9
1,753,481 + -0.9
1,753,481 + +0.0
1,753,481 + -0.4
1,753,481 + +1.4
1,753,482 - +0.5
1,753,492 + +0.2
1,753,531 + -0.0
1,753,531 + -1.0
1,753,531 + -0.1
1,753,531 + -1.1
1,753,531 + -0.7
1,753,531 + +0.2
1,753,532 - -2.3
1,753,532 - +0.4
1,753,532 - -2.1
1,753,560 + -0.2
1,753,792 + ABIE41_RS08500 0.13 -0.8
1,753,793 - ABIE41_RS08500 0.13 +0.4
1,753,793 - ABIE41_RS08500 0.13 +0.6
1,753,910 + ABIE41_RS08500 0.22 -0.2
1,753,911 - ABIE41_RS08500 0.22 +0.4
1,753,911 - ABIE41_RS08500 0.22 +1.2
1,753,954 + ABIE41_RS08500 0.25 +0.0
1,754,320 + ABIE41_RS08500 0.55 -0.1
1,754,321 - ABIE41_RS08500 0.55 +0.1
1,754,938 + +0.1
1,754,939 - +0.4
1,754,939 - -1.1
1,754,939 - +0.9
1,755,324 + ABIE41_RS08505 0.22 -0.1
1,755,324 + ABIE41_RS08505 0.22 +0.2
1,755,324 + ABIE41_RS08505 0.22 +1.5
1,755,324 + ABIE41_RS08505 0.22 +0.1
1,755,324 + ABIE41_RS08505 0.22 +0.0
1,755,324 + ABIE41_RS08505 0.22 +0.3
1,755,325 - ABIE41_RS08505 0.23 +1.3
1,755,325 - ABIE41_RS08505 0.23 +1.5
1,755,325 - ABIE41_RS08505 0.23 +0.3
1,755,325 - ABIE41_RS08505 0.23 +0.1
1,755,330 + ABIE41_RS08505 0.23 -2.0
1,755,330 + ABIE41_RS08505 0.23 +0.7
1,755,330 + ABIE41_RS08505 0.23 -0.1
1,755,330 + ABIE41_RS08505 0.23 -0.2
1,755,330 + ABIE41_RS08505 0.23 +0.3
1,755,330 + ABIE41_RS08505 0.23 +1.2
1,755,330 + ABIE41_RS08505 0.23 +1.8
1,755,330 + ABIE41_RS08505 0.23 +0.8
1,755,330 + ABIE41_RS08505 0.23 +0.4
1,755,331 - ABIE41_RS08505 0.23 +1.6
1,755,331 - ABIE41_RS08505 0.23 +0.7
1,755,331 - ABIE41_RS08505 0.23 -0.3
1,755,880 - ABIE41_RS08505 0.66 +1.3
1,755,880 - ABIE41_RS08505 0.66 +1.1

Or see this region's nucleotide sequence