Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07720 and ABIE41_RS07725 are separated by 141 nucleotides ABIE41_RS07725 and ABIE41_RS07730 are separated by 66 nucleotides ABIE41_RS07730 and ABIE41_RS07735 are separated by 4 nucleotides
ABIE41_RS07720: ABIE41_RS07720 - phosphonate ABC transporter ATP-binding protein, at 1,577,310 to 1,578,128
_RS07720
ABIE41_RS07725: ABIE41_RS07725 - TetR/AcrR family transcriptional regulator, at 1,578,270 to 1,578,947
_RS07725
ABIE41_RS07730: ABIE41_RS07730 - efflux RND transporter periplasmic adaptor subunit, at 1,579,014 to 1,580,120
_RS07730
ABIE41_RS07735: ABIE41_RS07735 - efflux RND transporter permease subunit, at 1,580,125 to 1,582,938
_RS07735
Position (kb)
1579
1580
1581 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1578.216 kb on + strand at 1578.216 kb on + strand at 1578.310 kb on + strand at 1578.310 kb on + strand at 1578.310 kb on + strand at 1578.311 kb on - strand at 1578.311 kb on - strand at 1578.311 kb on - strand at 1578.311 kb on - strand at 1578.311 kb on - strand at 1578.311 kb on - strand at 1578.514 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.742 kb on + strand, within ABIE41_RS07725 at 1578.743 kb on - strand, within ABIE41_RS07725 at 1578.743 kb on - strand, within ABIE41_RS07725 at 1578.743 kb on - strand, within ABIE41_RS07725 at 1578.743 kb on - strand, within ABIE41_RS07725 at 1578.803 kb on - strand, within ABIE41_RS07725 at 1578.813 kb on + strand, within ABIE41_RS07725 at 1578.814 kb on - strand, within ABIE41_RS07725 at 1578.957 kb on + strand at 1578.984 kb on + strand at 1579.013 kb on + strand at 1579.013 kb on + strand at 1579.013 kb on + strand at 1579.013 kb on + strand at 1579.013 kb on + strand at 1579.013 kb on + strand at 1579.014 kb on - strand at 1579.014 kb on - strand at 1579.014 kb on - strand at 1579.014 kb on - strand at 1579.014 kb on - strand at 1579.029 kb on + strand at 1579.029 kb on + strand at 1579.029 kb on + strand at 1579.066 kb on - strand at 1579.068 kb on + strand at 1579.068 kb on + strand at 1579.068 kb on + strand at 1579.068 kb on + strand at 1579.069 kb on - strand at 1579.069 kb on - strand at 1579.069 kb on - strand at 1579.069 kb on - strand at 1579.069 kb on - strand at 1579.069 kb on - strand at 1579.080 kb on + strand at 1579.080 kb on + strand at 1579.083 kb on + strand at 1579.084 kb on - strand at 1579.084 kb on - strand at 1579.566 kb on + strand, within ABIE41_RS07730 at 1579.567 kb on - strand, within ABIE41_RS07730 at 1579.567 kb on - strand, within ABIE41_RS07730 at 1579.817 kb on - strand, within ABIE41_RS07730 at 1579.817 kb on - strand, within ABIE41_RS07730 at 1580.209 kb on + strand at 1580.210 kb on - strand at 1580.210 kb on - strand at 1580.210 kb on - strand at 1580.212 kb on - strand at 1580.212 kb on - strand at 1580.212 kb on - strand at 1580.275 kb on + strand at 1580.275 kb on + strand at 1580.275 kb on + strand at 1580.275 kb on + strand at 1580.275 kb on + strand at 1580.276 kb on - strand at 1580.276 kb on - strand at 1580.668 kb on + strand, within ABIE41_RS07735 at 1580.711 kb on - strand, within ABIE41_RS07735 at 1580.711 kb on - strand, within ABIE41_RS07735 at 1580.711 kb on - strand, within ABIE41_RS07735 at 1581.082 kb on + strand, within ABIE41_RS07735 at 1581.082 kb on + strand, within ABIE41_RS07735 at 1581.083 kb on - strand, within ABIE41_RS07735 at 1581.083 kb on - strand, within ABIE41_RS07735 at 1581.083 kb on - strand, within ABIE41_RS07735
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,578,216 + -0.6 1,578,216 + +1.1 1,578,310 + +0.4 1,578,310 + -0.5 1,578,310 + +0.6 1,578,311 - -0.2 1,578,311 - -0.3 1,578,311 - -0.1 1,578,311 - -0.4 1,578,311 - +0.3 1,578,311 - +2.0 1,578,514 + ABIE41_RS07725 0.36 -0.9 1,578,742 + ABIE41_RS07725 0.70 -0.1 1,578,742 + ABIE41_RS07725 0.70 -1.0 1,578,742 + ABIE41_RS07725 0.70 +0.1 1,578,742 + ABIE41_RS07725 0.70 -0.5 1,578,742 + ABIE41_RS07725 0.70 -1.8 1,578,742 + ABIE41_RS07725 0.70 -0.2 1,578,743 - ABIE41_RS07725 0.70 -0.1 1,578,743 - ABIE41_RS07725 0.70 -2.2 1,578,743 - ABIE41_RS07725 0.70 -0.1 1,578,743 - ABIE41_RS07725 0.70 -0.3 1,578,803 - ABIE41_RS07725 0.79 -0.6 1,578,813 + ABIE41_RS07725 0.80 -0.1 1,578,814 - ABIE41_RS07725 0.80 -0.3 1,578,957 + -0.3 1,578,984 + +0.7 1,579,013 + +0.0 1,579,013 + -0.0 1,579,013 + -1.7 1,579,013 + +1.0 1,579,013 + -0.9 1,579,013 + -0.2 1,579,014 - +2.3 1,579,014 - -0.5 1,579,014 - -0.0 1,579,014 - -0.3 1,579,014 - +0.0 1,579,029 + +0.1 1,579,029 + -0.1 1,579,029 + -0.6 1,579,066 - +0.5 1,579,068 + -0.7 1,579,068 + -0.3 1,579,068 + +0.6 1,579,068 + +0.9 1,579,069 - +0.4 1,579,069 - +0.4 1,579,069 - -0.5 1,579,069 - +0.0 1,579,069 - +0.1 1,579,069 - -0.4 1,579,080 + -1.3 1,579,080 + -0.3 1,579,083 + -0.2 1,579,084 - -0.1 1,579,084 - +1.3 1,579,566 + ABIE41_RS07730 0.50 -0.1 1,579,567 - ABIE41_RS07730 0.50 -0.3 1,579,567 - ABIE41_RS07730 0.50 +0.1 1,579,817 - ABIE41_RS07730 0.73 -0.7 1,579,817 - ABIE41_RS07730 0.73 -1.3 1,580,209 + +0.2 1,580,210 - +0.1 1,580,210 - +0.1 1,580,210 - +0.5 1,580,212 - +0.4 1,580,212 - -0.2 1,580,212 - +0.2 1,580,275 + +0.3 1,580,275 + +1.0 1,580,275 + -0.9 1,580,275 + -0.5 1,580,275 + +0.5 1,580,276 - -1.5 1,580,276 - +0.7 1,580,668 + ABIE41_RS07735 0.19 +0.2 1,580,711 - ABIE41_RS07735 0.21 +1.5 1,580,711 - ABIE41_RS07735 0.21 -1.5 1,580,711 - ABIE41_RS07735 0.21 -0.2 1,581,082 + ABIE41_RS07735 0.34 -0.3 1,581,082 + ABIE41_RS07735 0.34 +0.2 1,581,083 - ABIE41_RS07735 0.34 -0.2 1,581,083 - ABIE41_RS07735 0.34 -0.1 1,581,083 - ABIE41_RS07735 0.34 +0.5
Or see this region's nucleotide sequence