Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01210 and ABIE41_RS01215 overlap by 4 nucleotides ABIE41_RS01215 and ABIE41_RS01220 are separated by 38 nucleotides
ABIE41_RS01210: ABIE41_RS01210 - malto-oligosyltrehalose trehalohydrolase, at 234,994 to 236,787
_RS01210
ABIE41_RS01215: ABIE41_RS01215 - malto-oligosyltrehalose synthase, at 236,784 to 239,615
_RS01215
ABIE41_RS01220: ABIE41_RS01220 - 1,4-alpha-glucan branching protein GlgB, at 239,654 to 241,852
_RS01220
Position (kb) 236
237
238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 236.562 kb on - strand, within ABIE41_RS01210 at 236.935 kb on - strand at 236.935 kb on - strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.965 kb on - strand at 236.965 kb on - strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.131 kb on + strand, within ABIE41_RS01215 at 237.131 kb on + strand, within ABIE41_RS01215 at 237.131 kb on + strand, within ABIE41_RS01215 at 237.132 kb on - strand, within ABIE41_RS01215 at 237.132 kb on - strand, within ABIE41_RS01215 at 237.276 kb on + strand, within ABIE41_RS01215 at 237.276 kb on + strand, within ABIE41_RS01215 at 237.385 kb on - strand, within ABIE41_RS01215 at 237.632 kb on - strand, within ABIE41_RS01215 at 237.632 kb on - strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.679 kb on - strand, within ABIE41_RS01215 at 237.720 kb on + strand, within ABIE41_RS01215 at 237.721 kb on - strand, within ABIE41_RS01215 at 237.852 kb on - strand, within ABIE41_RS01215 at 237.879 kb on + strand, within ABIE41_RS01215 at 237.879 kb on + strand, within ABIE41_RS01215 at 237.879 kb on + strand, within ABIE41_RS01215 at 237.880 kb on - strand, within ABIE41_RS01215 at 237.880 kb on - strand, within ABIE41_RS01215 at 237.880 kb on - strand, within ABIE41_RS01215 at 237.880 kb on - strand, within ABIE41_RS01215 at 237.919 kb on - strand, within ABIE41_RS01215 at 237.919 kb on - strand, within ABIE41_RS01215 at 237.919 kb on - strand, within ABIE41_RS01215 at 237.919 kb on - strand, within ABIE41_RS01215 at 237.919 kb on - strand, within ABIE41_RS01215 at 237.990 kb on + strand, within ABIE41_RS01215 at 237.990 kb on + strand, within ABIE41_RS01215 at 237.991 kb on - strand, within ABIE41_RS01215 at 237.991 kb on - strand, within ABIE41_RS01215 at 237.991 kb on - strand, within ABIE41_RS01215 at 238.266 kb on + strand, within ABIE41_RS01215 at 238.266 kb on + strand, within ABIE41_RS01215 at 238.266 kb on + strand, within ABIE41_RS01215 at 238.275 kb on + strand, within ABIE41_RS01215 at 238.275 kb on + strand, within ABIE41_RS01215 at 238.275 kb on + strand, within ABIE41_RS01215 at 238.275 kb on + strand, within ABIE41_RS01215 at 238.275 kb on + strand, within ABIE41_RS01215 at 238.966 kb on - strand, within ABIE41_RS01215 at 238.966 kb on - strand, within ABIE41_RS01215 at 239.190 kb on + strand, within ABIE41_RS01215 at 239.190 kb on + strand, within ABIE41_RS01215 at 239.322 kb on + strand, within ABIE41_RS01215 at 239.323 kb on - strand, within ABIE41_RS01215 at 239.323 kb on - strand, within ABIE41_RS01215 at 239.323 kb on - strand, within ABIE41_RS01215 at 239.323 kb on - strand, within ABIE41_RS01215 at 239.338 kb on - strand at 239.338 kb on - strand at 239.414 kb on + strand at 239.656 kb on - strand at 239.787 kb on + strand at 239.788 kb on - strand at 239.788 kb on - strand at 239.851 kb on - strand at 239.851 kb on - strand at 239.851 kb on - strand at 240.015 kb on + strand, within ABIE41_RS01220 at 240.016 kb on - strand, within ABIE41_RS01220 at 240.180 kb on + strand, within ABIE41_RS01220 at 240.180 kb on + strand, within ABIE41_RS01220 at 240.181 kb on - strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.300 kb on + strand, within ABIE41_RS01220 at 240.301 kb on - strand, within ABIE41_RS01220 at 240.301 kb on - strand, within ABIE41_RS01220 at 240.301 kb on - strand, within ABIE41_RS01220 at 240.301 kb on - strand, within ABIE41_RS01220 at 240.342 kb on + strand, within ABIE41_RS01220 at 240.343 kb on - strand, within ABIE41_RS01220 at 240.364 kb on - strand, within ABIE41_RS01220 at 240.364 kb on - strand, within ABIE41_RS01220 at 240.592 kb on + strand, within ABIE41_RS01220 at 240.593 kb on - strand, within ABIE41_RS01220 at 240.594 kb on + strand, within ABIE41_RS01220 at 240.594 kb on + strand, within ABIE41_RS01220 at 240.594 kb on + strand, within ABIE41_RS01220 at 240.603 kb on + strand, within ABIE41_RS01220 at 240.604 kb on - strand, within ABIE41_RS01220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 236,562 - ABIE41_RS01210 0.87 +1.2 236,935 - -2.0 236,935 - -0.5 236,964 + +0.1 236,964 + +0.4 236,964 + -1.7 236,964 + +0.0 236,964 + +1.0 236,964 + +0.5 236,965 - -0.1 236,965 - +0.3 237,009 + -0.4 237,009 + -2.9 237,009 + -1.3 237,009 + -0.8 237,010 - +0.3 237,010 - -0.2 237,010 - +0.3 237,010 - -0.2 237,010 - -1.3 237,131 + ABIE41_RS01215 0.12 +0.3 237,131 + ABIE41_RS01215 0.12 +0.1 237,131 + ABIE41_RS01215 0.12 +0.2 237,132 - ABIE41_RS01215 0.12 -0.5 237,132 - ABIE41_RS01215 0.12 +0.2 237,276 + ABIE41_RS01215 0.17 +0.3 237,276 + ABIE41_RS01215 0.17 -0.0 237,385 - ABIE41_RS01215 0.21 +0.6 237,632 - ABIE41_RS01215 0.30 +1.5 237,632 - ABIE41_RS01215 0.30 -0.5 237,678 + ABIE41_RS01215 0.32 -0.4 237,678 + ABIE41_RS01215 0.32 +1.0 237,678 + ABIE41_RS01215 0.32 -0.7 237,678 + ABIE41_RS01215 0.32 +0.2 237,679 - ABIE41_RS01215 0.32 -0.4 237,720 + ABIE41_RS01215 0.33 +0.1 237,721 - ABIE41_RS01215 0.33 -0.2 237,852 - ABIE41_RS01215 0.38 -0.7 237,879 + ABIE41_RS01215 0.39 +0.8 237,879 + ABIE41_RS01215 0.39 +0.4 237,879 + ABIE41_RS01215 0.39 +2.2 237,880 - ABIE41_RS01215 0.39 -0.9 237,880 - ABIE41_RS01215 0.39 +0.0 237,880 - ABIE41_RS01215 0.39 +1.1 237,880 - ABIE41_RS01215 0.39 -0.3 237,919 - ABIE41_RS01215 0.40 -0.5 237,919 - ABIE41_RS01215 0.40 -1.4 237,919 - ABIE41_RS01215 0.40 -1.1 237,919 - ABIE41_RS01215 0.40 -1.7 237,919 - ABIE41_RS01215 0.40 -2.0 237,990 + ABIE41_RS01215 0.43 +0.9 237,990 + ABIE41_RS01215 0.43 -0.6 237,991 - ABIE41_RS01215 0.43 +0.2 237,991 - ABIE41_RS01215 0.43 +0.5 237,991 - ABIE41_RS01215 0.43 +0.1 238,266 + ABIE41_RS01215 0.52 -1.2 238,266 + ABIE41_RS01215 0.52 -1.5 238,266 + ABIE41_RS01215 0.52 +0.1 238,275 + ABIE41_RS01215 0.53 +0.9 238,275 + ABIE41_RS01215 0.53 +0.5 238,275 + ABIE41_RS01215 0.53 +0.3 238,275 + ABIE41_RS01215 0.53 +0.9 238,275 + ABIE41_RS01215 0.53 +0.3 238,966 - ABIE41_RS01215 0.77 +0.4 238,966 - ABIE41_RS01215 0.77 -0.1 239,190 + ABIE41_RS01215 0.85 +0.2 239,190 + ABIE41_RS01215 0.85 -0.2 239,322 + ABIE41_RS01215 0.90 +0.2 239,323 - ABIE41_RS01215 0.90 +0.8 239,323 - ABIE41_RS01215 0.90 +0.0 239,323 - ABIE41_RS01215 0.90 -0.4 239,323 - ABIE41_RS01215 0.90 +0.9 239,338 - -0.1 239,338 - +1.5 239,414 + +0.0 239,656 - +0.3 239,787 + +0.7 239,788 - +1.5 239,788 - -2.5 239,851 - +0.3 239,851 - -0.3 239,851 - -0.2 240,015 + ABIE41_RS01220 0.16 -0.6 240,016 - ABIE41_RS01220 0.16 +0.3 240,180 + ABIE41_RS01220 0.24 -0.0 240,180 + ABIE41_RS01220 0.24 -1.3 240,181 - ABIE41_RS01220 0.24 -0.0 240,300 + ABIE41_RS01220 0.29 -0.0 240,300 + ABIE41_RS01220 0.29 -0.7 240,300 + ABIE41_RS01220 0.29 -0.6 240,300 + ABIE41_RS01220 0.29 -0.9 240,300 + ABIE41_RS01220 0.29 +1.2 240,300 + ABIE41_RS01220 0.29 -0.6 240,301 - ABIE41_RS01220 0.29 -0.1 240,301 - ABIE41_RS01220 0.29 -0.9 240,301 - ABIE41_RS01220 0.29 -0.1 240,301 - ABIE41_RS01220 0.29 -0.1 240,342 + ABIE41_RS01220 0.31 +0.5 240,343 - ABIE41_RS01220 0.31 -0.3 240,364 - ABIE41_RS01220 0.32 +0.7 240,364 - ABIE41_RS01220 0.32 +0.2 240,592 + ABIE41_RS01220 0.43 +0.4 240,593 - ABIE41_RS01220 0.43 -1.1 240,594 + ABIE41_RS01220 0.43 +0.1 240,594 + ABIE41_RS01220 0.43 -0.9 240,594 + ABIE41_RS01220 0.43 +0.7 240,603 + ABIE41_RS01220 0.43 +0.5 240,604 - ABIE41_RS01220 0.43 +0.5
Or see this region's nucleotide sequence