Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30640 and ABIE40_RS30645 are separated by 585 nucleotides ABIE40_RS30645 and ABIE40_RS30650 overlap by 4 nucleotides ABIE40_RS30650 and ABIE40_RS30655 are separated by 9 nucleotides ABIE40_RS30655 and ABIE40_RS30660 are separated by 205 nucleotides
ABIE40_RS30640: ABIE40_RS30640 - IS3 family transposase, at 820,050 to 821,239
_RS30640
ABIE40_RS30645: ABIE40_RS30645 - PAS domain-containing protein, at 821,825 to 822,952
_RS30645
ABIE40_RS30650: ABIE40_RS30650 - response regulator, at 822,949 to 823,380
_RS30650
ABIE40_RS30655: ABIE40_RS30655 - hypothetical protein, at 823,390 to 823,605
_RS30655
ABIE40_RS30660: ABIE40_RS30660 - ferritin-like domain-containing protein, at 823,811 to 824,323
_RS30660
Position (kb) 821
822
823 Strain fitness (log2 ratio) -1
0
1
2 at 821.303 kb on + strand at 821.304 kb on - strand at 821.424 kb on + strand at 821.472 kb on + strand at 821.473 kb on - strand at 821.520 kb on + strand at 821.520 kb on + strand at 821.570 kb on - strand at 821.570 kb on - strand at 821.695 kb on + strand at 821.825 kb on - strand at 822.144 kb on - strand, within ABIE40_RS30645 at 822.144 kb on - strand, within ABIE40_RS30645 at 822.145 kb on + strand, within ABIE40_RS30645 at 822.145 kb on + strand, within ABIE40_RS30645 at 822.146 kb on - strand, within ABIE40_RS30645 at 822.397 kb on + strand, within ABIE40_RS30645 at 822.398 kb on - strand, within ABIE40_RS30645 at 822.398 kb on - strand, within ABIE40_RS30645 at 822.518 kb on - strand, within ABIE40_RS30645 at 822.604 kb on + strand, within ABIE40_RS30645 at 822.605 kb on - strand, within ABIE40_RS30645 at 822.635 kb on + strand, within ABIE40_RS30645 at 822.635 kb on + strand, within ABIE40_RS30645 at 822.804 kb on + strand, within ABIE40_RS30645 at 822.805 kb on - strand, within ABIE40_RS30645 at 822.805 kb on - strand, within ABIE40_RS30645 at 822.805 kb on - strand, within ABIE40_RS30645 at 822.808 kb on + strand, within ABIE40_RS30645 at 822.808 kb on + strand, within ABIE40_RS30645 at 822.832 kb on + strand, within ABIE40_RS30645 at 822.956 kb on + strand at 822.956 kb on + strand at 822.956 kb on + strand at 822.957 kb on - strand at 822.960 kb on + strand at 823.035 kb on + strand, within ABIE40_RS30650 at 823.113 kb on - strand, within ABIE40_RS30650 at 823.113 kb on - strand, within ABIE40_RS30650 at 823.171 kb on + strand, within ABIE40_RS30650 at 823.171 kb on + strand, within ABIE40_RS30650 at 823.483 kb on - strand, within ABIE40_RS30655 at 823.498 kb on + strand, within ABIE40_RS30655 at 823.560 kb on - strand, within ABIE40_RS30655 at 823.604 kb on - strand at 823.680 kb on + strand at 823.687 kb on + strand at 823.687 kb on + strand at 823.711 kb on - strand at 823.711 kb on - strand at 823.711 kb on - strand at 823.711 kb on - strand at 823.745 kb on + strand at 823.790 kb on + strand at 823.790 kb on + strand at 823.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 821,303 + +0.6 821,304 - +1.8 821,424 + -0.7 821,472 + +2.3 821,473 - +2.0 821,520 + -0.3 821,520 + -0.5 821,570 - +0.3 821,570 - -0.9 821,695 + -1.4 821,825 - +0.5 822,144 - ABIE40_RS30645 0.28 +0.7 822,144 - ABIE40_RS30645 0.28 +2.5 822,145 + ABIE40_RS30645 0.28 -0.6 822,145 + ABIE40_RS30645 0.28 +0.2 822,146 - ABIE40_RS30645 0.28 -0.6 822,397 + ABIE40_RS30645 0.51 +1.4 822,398 - ABIE40_RS30645 0.51 -0.5 822,398 - ABIE40_RS30645 0.51 -0.7 822,518 - ABIE40_RS30645 0.61 -0.1 822,604 + ABIE40_RS30645 0.69 -0.8 822,605 - ABIE40_RS30645 0.69 -0.6 822,635 + ABIE40_RS30645 0.72 +0.0 822,635 + ABIE40_RS30645 0.72 +0.6 822,804 + ABIE40_RS30645 0.87 +0.1 822,805 - ABIE40_RS30645 0.87 -0.2 822,805 - ABIE40_RS30645 0.87 +0.7 822,805 - ABIE40_RS30645 0.87 -0.9 822,808 + ABIE40_RS30645 0.87 -0.5 822,808 + ABIE40_RS30645 0.87 -0.5 822,832 + ABIE40_RS30645 0.89 -0.6 822,956 + +0.8 822,956 + +0.0 822,956 + -0.3 822,957 - -0.9 822,960 + -0.4 823,035 + ABIE40_RS30650 0.20 -0.2 823,113 - ABIE40_RS30650 0.38 -0.3 823,113 - ABIE40_RS30650 0.38 -0.1 823,171 + ABIE40_RS30650 0.51 -0.2 823,171 + ABIE40_RS30650 0.51 -0.2 823,483 - ABIE40_RS30655 0.43 -0.6 823,498 + ABIE40_RS30655 0.50 -0.9 823,560 - ABIE40_RS30655 0.79 -0.3 823,604 - -0.8 823,680 + +1.0 823,687 + -0.2 823,687 + -0.4 823,711 - -0.8 823,711 - +0.3 823,711 - -0.7 823,711 - -0.1 823,745 + -0.6 823,790 + -0.2 823,790 + -0.2 823,805 - -0.8
Or see this region's nucleotide sequence