Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25685

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25680 and ABIE40_RS25685 overlap by 4 nucleotidesABIE40_RS25685 and ABIE40_RS25690 overlap by 1 nucleotidesABIE40_RS25690 and ABIE40_RS25695 overlap by 4 nucleotides ABIE40_RS25680: ABIE40_RS25680 - M20 family metallopeptidase, at 1,315,301 to 1,316,725 _RS25680 ABIE40_RS25685: ABIE40_RS25685 - ABC transporter permease subunit, at 1,316,722 to 1,317,441 _RS25685 ABIE40_RS25690: ABIE40_RS25690 - ABC transporter permease, at 1,317,441 to 1,318,181 _RS25690 ABIE40_RS25695: ABIE40_RS25695 - ABC transporter ATP-binding protein, at 1,318,178 to 1,318,942 _RS25695 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -2 -1 0 1 2at 1315.964 kb on + strand, within ABIE40_RS25680at 1315.964 kb on + strand, within ABIE40_RS25680at 1315.964 kb on + strand, within ABIE40_RS25680at 1315.964 kb on + strand, within ABIE40_RS25680at 1315.964 kb on + strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.965 kb on - strand, within ABIE40_RS25680at 1315.966 kb on + strand, within ABIE40_RS25680at 1315.966 kb on + strand, within ABIE40_RS25680at 1315.966 kb on + strand, within ABIE40_RS25680at 1315.966 kb on + strand, within ABIE40_RS25680at 1315.967 kb on - strand, within ABIE40_RS25680at 1316.003 kb on + strand, within ABIE40_RS25680at 1316.066 kb on + strand, within ABIE40_RS25680at 1316.066 kb on + strand, within ABIE40_RS25680at 1316.066 kb on + strand, within ABIE40_RS25680at 1316.066 kb on + strand, within ABIE40_RS25680at 1316.067 kb on - strand, within ABIE40_RS25680at 1316.067 kb on - strand, within ABIE40_RS25680at 1316.333 kb on + strand, within ABIE40_RS25680at 1316.483 kb on + strand, within ABIE40_RS25680at 1316.483 kb on + strand, within ABIE40_RS25680at 1316.484 kb on - strand, within ABIE40_RS25680at 1316.828 kb on - strand, within ABIE40_RS25685at 1316.828 kb on - strand, within ABIE40_RS25685at 1316.873 kb on + strand, within ABIE40_RS25685at 1316.874 kb on - strand, within ABIE40_RS25685at 1316.874 kb on - strand, within ABIE40_RS25685at 1316.907 kb on + strand, within ABIE40_RS25685at 1316.908 kb on - strand, within ABIE40_RS25685at 1316.908 kb on - strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.911 kb on + strand, within ABIE40_RS25685at 1316.912 kb on - strand, within ABIE40_RS25685at 1316.912 kb on - strand, within ABIE40_RS25685at 1316.912 kb on - strand, within ABIE40_RS25685at 1316.912 kb on - strand, within ABIE40_RS25685at 1316.913 kb on + strand, within ABIE40_RS25685at 1316.913 kb on + strand, within ABIE40_RS25685at 1316.914 kb on - strand, within ABIE40_RS25685at 1316.953 kb on + strand, within ABIE40_RS25685at 1316.953 kb on + strand, within ABIE40_RS25685at 1316.953 kb on + strand, within ABIE40_RS25685at 1316.954 kb on - strand, within ABIE40_RS25685at 1316.954 kb on - strand, within ABIE40_RS25685at 1316.954 kb on - strand, within ABIE40_RS25685at 1316.963 kb on - strand, within ABIE40_RS25685at 1316.963 kb on - strand, within ABIE40_RS25685at 1317.340 kb on + strand, within ABIE40_RS25685at 1317.340 kb on + strand, within ABIE40_RS25685at 1317.340 kb on + strand, within ABIE40_RS25685at 1317.341 kb on - strand, within ABIE40_RS25685at 1317.341 kb on - strand, within ABIE40_RS25685at 1317.361 kb on + strand, within ABIE40_RS25685at 1317.361 kb on + strand, within ABIE40_RS25685at 1317.361 kb on + strand, within ABIE40_RS25685at 1317.362 kb on - strand, within ABIE40_RS25685at 1317.362 kb on - strand, within ABIE40_RS25685at 1317.362 kb on - strand, within ABIE40_RS25685at 1317.362 kb on - strand, within ABIE40_RS25685at 1317.362 kb on - strand, within ABIE40_RS25685at 1317.396 kb on - strandat 1317.606 kb on + strand, within ABIE40_RS25690at 1317.606 kb on + strand, within ABIE40_RS25690at 1317.606 kb on + strand, within ABIE40_RS25690at 1317.607 kb on - strand, within ABIE40_RS25690at 1317.657 kb on + strand, within ABIE40_RS25690at 1317.657 kb on + strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.658 kb on - strand, within ABIE40_RS25690at 1317.660 kb on + strand, within ABIE40_RS25690at 1317.660 kb on + strand, within ABIE40_RS25690at 1317.723 kb on + strand, within ABIE40_RS25690at 1317.755 kb on + strand, within ABIE40_RS25690at 1317.755 kb on + strand, within ABIE40_RS25690at 1317.755 kb on + strand, within ABIE40_RS25690at 1317.756 kb on - strand, within ABIE40_RS25690at 1317.756 kb on - strand, within ABIE40_RS25690at 1317.756 kb on - strand, within ABIE40_RS25690at 1317.765 kb on + strand, within ABIE40_RS25690at 1317.765 kb on + strand, within ABIE40_RS25690at 1317.766 kb on - strand, within ABIE40_RS25690at 1317.907 kb on - strand, within ABIE40_RS25690at 1317.909 kb on - strand, within ABIE40_RS25690at 1317.909 kb on - strand, within ABIE40_RS25690at 1318.047 kb on + strand, within ABIE40_RS25690at 1318.047 kb on + strand, within ABIE40_RS25690at 1318.047 kb on + strand, within ABIE40_RS25690at 1318.047 kb on + strand, within ABIE40_RS25690at 1318.131 kb on + strandat 1318.159 kb on + strandat 1318.160 kb on - strandat 1318.160 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,315,964 + ABIE40_RS25680 0.47 +0.1
1,315,964 + ABIE40_RS25680 0.47 -1.0
1,315,964 + ABIE40_RS25680 0.47 -0.0
1,315,964 + ABIE40_RS25680 0.47 -1.1
1,315,964 + ABIE40_RS25680 0.47 -0.1
1,315,965 - ABIE40_RS25680 0.47 +0.6
1,315,965 - ABIE40_RS25680 0.47 -1.9
1,315,965 - ABIE40_RS25680 0.47 -0.3
1,315,965 - ABIE40_RS25680 0.47 -0.1
1,315,965 - ABIE40_RS25680 0.47 -0.2
1,315,965 - ABIE40_RS25680 0.47 -0.7
1,315,965 - ABIE40_RS25680 0.47 -0.1
1,315,965 - ABIE40_RS25680 0.47 -0.5
1,315,965 - ABIE40_RS25680 0.47 +0.7
1,315,966 + ABIE40_RS25680 0.47 +0.1
1,315,966 + ABIE40_RS25680 0.47 -0.9
1,315,966 + ABIE40_RS25680 0.47 -1.0
1,315,966 + ABIE40_RS25680 0.47 -2.4
1,315,967 - ABIE40_RS25680 0.47 -1.5
1,316,003 + ABIE40_RS25680 0.49 -1.3
1,316,066 + ABIE40_RS25680 0.54 -0.0
1,316,066 + ABIE40_RS25680 0.54 -1.4
1,316,066 + ABIE40_RS25680 0.54 -0.6
1,316,066 + ABIE40_RS25680 0.54 +2.3
1,316,067 - ABIE40_RS25680 0.54 -1.0
1,316,067 - ABIE40_RS25680 0.54 -0.4
1,316,333 + ABIE40_RS25680 0.72 -0.4
1,316,483 + ABIE40_RS25680 0.83 +1.3
1,316,483 + ABIE40_RS25680 0.83 +0.9
1,316,484 - ABIE40_RS25680 0.83 +0.1
1,316,828 - ABIE40_RS25685 0.15 -1.8
1,316,828 - ABIE40_RS25685 0.15 -0.2
1,316,873 + ABIE40_RS25685 0.21 +0.8
1,316,874 - ABIE40_RS25685 0.21 +0.6
1,316,874 - ABIE40_RS25685 0.21 -0.5
1,316,907 + ABIE40_RS25685 0.26 +0.1
1,316,908 - ABIE40_RS25685 0.26 +0.4
1,316,908 - ABIE40_RS25685 0.26 -1.0
1,316,911 + ABIE40_RS25685 0.26 -0.4
1,316,911 + ABIE40_RS25685 0.26 +0.0
1,316,911 + ABIE40_RS25685 0.26 -0.6
1,316,911 + ABIE40_RS25685 0.26 -0.2
1,316,911 + ABIE40_RS25685 0.26 -0.1
1,316,911 + ABIE40_RS25685 0.26 -0.0
1,316,912 - ABIE40_RS25685 0.26 -0.1
1,316,912 - ABIE40_RS25685 0.26 +0.2
1,316,912 - ABIE40_RS25685 0.26 +0.2
1,316,912 - ABIE40_RS25685 0.26 +0.0
1,316,913 + ABIE40_RS25685 0.27 +2.2
1,316,913 + ABIE40_RS25685 0.27 -0.2
1,316,914 - ABIE40_RS25685 0.27 +1.2
1,316,953 + ABIE40_RS25685 0.32 +2.6
1,316,953 + ABIE40_RS25685 0.32 -2.3
1,316,953 + ABIE40_RS25685 0.32 -2.0
1,316,954 - ABIE40_RS25685 0.32 -0.7
1,316,954 - ABIE40_RS25685 0.32 -1.2
1,316,954 - ABIE40_RS25685 0.32 -0.8
1,316,963 - ABIE40_RS25685 0.33 +0.6
1,316,963 - ABIE40_RS25685 0.33 +0.8
1,317,340 + ABIE40_RS25685 0.86 +0.9
1,317,340 + ABIE40_RS25685 0.86 +0.6
1,317,340 + ABIE40_RS25685 0.86 -0.1
1,317,341 - ABIE40_RS25685 0.86 -1.7
1,317,341 - ABIE40_RS25685 0.86 -1.0
1,317,361 + ABIE40_RS25685 0.89 -0.0
1,317,361 + ABIE40_RS25685 0.89 -0.4
1,317,361 + ABIE40_RS25685 0.89 -0.2
1,317,362 - ABIE40_RS25685 0.89 -0.3
1,317,362 - ABIE40_RS25685 0.89 -0.7
1,317,362 - ABIE40_RS25685 0.89 +0.2
1,317,362 - ABIE40_RS25685 0.89 +1.1
1,317,362 - ABIE40_RS25685 0.89 -1.3
1,317,396 - +0.8
1,317,606 + ABIE40_RS25690 0.22 +0.3
1,317,606 + ABIE40_RS25690 0.22 -1.4
1,317,606 + ABIE40_RS25690 0.22 -0.2
1,317,607 - ABIE40_RS25690 0.22 -0.2
1,317,657 + ABIE40_RS25690 0.29 -0.3
1,317,657 + ABIE40_RS25690 0.29 -0.8
1,317,658 - ABIE40_RS25690 0.29 +0.1
1,317,658 - ABIE40_RS25690 0.29 -1.0
1,317,658 - ABIE40_RS25690 0.29 -0.4
1,317,658 - ABIE40_RS25690 0.29 -0.1
1,317,658 - ABIE40_RS25690 0.29 -1.3
1,317,658 - ABIE40_RS25690 0.29 -0.7
1,317,660 + ABIE40_RS25690 0.30 +0.8
1,317,660 + ABIE40_RS25690 0.30 -1.6
1,317,723 + ABIE40_RS25690 0.38 -1.7
1,317,755 + ABIE40_RS25690 0.42 -0.8
1,317,755 + ABIE40_RS25690 0.42 -0.2
1,317,755 + ABIE40_RS25690 0.42 -0.3
1,317,756 - ABIE40_RS25690 0.43 +0.1
1,317,756 - ABIE40_RS25690 0.43 +0.3
1,317,756 - ABIE40_RS25690 0.43 -0.2
1,317,765 + ABIE40_RS25690 0.44 -0.2
1,317,765 + ABIE40_RS25690 0.44 -0.9
1,317,766 - ABIE40_RS25690 0.44 -0.4
1,317,907 - ABIE40_RS25690 0.63 -0.5
1,317,909 - ABIE40_RS25690 0.63 +1.1
1,317,909 - ABIE40_RS25690 0.63 -0.9
1,318,047 + ABIE40_RS25690 0.82 +0.1
1,318,047 + ABIE40_RS25690 0.82 -0.0
1,318,047 + ABIE40_RS25690 0.82 +0.4
1,318,047 + ABIE40_RS25690 0.82 -0.2
1,318,131 + -0.5
1,318,159 + +0.7
1,318,160 - -0.6
1,318,160 - -0.8

Or see this region's nucleotide sequence