Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24610

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
1,070,255	+				+0.1
1,070,256	-				-1.0
1,070,256	-				+0.3
1,070,256	-				-0.1
1,070,281	+				-0.3
1,070,281	+				-1.1
1,070,282	-				+2.2
1,070,282	-				-0.1
1,070,282	-				+0.7
1,070,353	+				+0.5
1,070,353	+				+0.1
1,070,354	-				+0.7
1,070,354	-				-0.5
1,070,354	-				+1.3
1,070,356	+				+0.5
1,070,356	+				-1.0
1,070,356	+				+0.3
1,070,356	+				-0.8
1,070,356	+				-0.1
1,070,357	-				-1.7
1,070,358	+				+1.0
1,070,409	+		ABIE40_RS24605	0.14	+0.5
1,070,409	+		ABIE40_RS24605	0.14	+0.3
1,070,409	+		ABIE40_RS24605	0.14	+0.8
1,070,410	-		ABIE40_RS24605	0.15	+0.2
1,070,421	+		ABIE40_RS24605	0.16	-0.4
1,070,421	+		ABIE40_RS24605	0.16	+0.0
1,070,421	+		ABIE40_RS24605	0.16	+0.4
1,070,421	+		ABIE40_RS24605	0.16	-0.9
1,070,422	-		ABIE40_RS24605	0.16	-1.1
1,070,422	-		ABIE40_RS24605	0.16	-0.2
1,070,512	+		ABIE40_RS24605	0.29	+0.1
1,070,513	-		ABIE40_RS24605	0.29	-2.6
1,070,513	-		ABIE40_RS24605	0.29	+0.2
1,070,517	+		ABIE40_RS24605	0.30	+0.6
1,070,517	+		ABIE40_RS24605	0.30	+0.2
1,070,517	+		ABIE40_RS24605	0.30	-0.0
1,070,694	+		ABIE40_RS24605	0.56	-1.2
1,070,694	+		ABIE40_RS24605	0.56	+0.4
1,070,694	+		ABIE40_RS24605	0.56	-1.7
1,070,694	+		ABIE40_RS24605	0.56	-0.0
1,070,694	+		ABIE40_RS24605	0.56	-0.0
1,070,695	-		ABIE40_RS24605	0.56	-0.5
1,070,695	-		ABIE40_RS24605	0.56	+0.8
1,071,182	+				+0.3
1,071,182	+				-0.3
1,071,182	+				-1.8
1,071,182	+				+1.2
1,071,182	+				+0.2
1,071,183	-				-0.6
1,071,183	-				-0.8
1,071,189	+				-0.3
1,071,189	+				+0.5
1,071,189	+				+0.1
1,071,190	-				-0.1
1,071,308	+		ABIE40_RS24610	0.11	-0.6
1,071,308	+		ABIE40_RS24610	0.11	-0.1
1,071,309	-		ABIE40_RS24610	0.11	+0.4
1,071,309	-		ABIE40_RS24610	0.11	-0.3
1,071,309	-		ABIE40_RS24610	0.11	+0.2
1,071,309	-		ABIE40_RS24610	0.11	+0.4
1,071,468	-		ABIE40_RS24610	0.17	+0.2
1,071,468	-		ABIE40_RS24610	0.17	-0.2
1,071,468	-		ABIE40_RS24610	0.17	-1.9
1,071,479	+		ABIE40_RS24610	0.18	+0.1
1,071,480	-		ABIE40_RS24610	0.18	-1.7
1,071,480	-		ABIE40_RS24610	0.18	-1.2
1,071,480	-		ABIE40_RS24610	0.18	+0.4
1,071,480	-		ABIE40_RS24610	0.18	-0.1
1,071,480	-		ABIE40_RS24610	0.18	+0.3
1,071,896	+		ABIE40_RS24610	0.33	-0.8
1,071,896	+		ABIE40_RS24610	0.33	+1.1
1,071,897	-		ABIE40_RS24610	0.33	+2.2
1,071,897	-		ABIE40_RS24610	0.33	+3.2
1,071,897	-		ABIE40_RS24610	0.33	+0.7
1,071,897	-		ABIE40_RS24610	0.33	-0.4
1,071,996	+		ABIE40_RS24610	0.37	+0.1
1,072,151	+		ABIE40_RS24610	0.43	-2.5
1,072,151	+		ABIE40_RS24610	0.43	-0.9
1,072,152	-		ABIE40_RS24610	0.43	-1.2
1,072,152	-		ABIE40_RS24610	0.43	-0.4
1,072,152	-		ABIE40_RS24610	0.43	+0.2
1,072,255	+		ABIE40_RS24610	0.46	+1.0
1,072,256	-		ABIE40_RS24610	0.46	-2.1
1,072,347	+		ABIE40_RS24610	0.50	-0.4
1,072,347	+		ABIE40_RS24610	0.50	+1.9
1,072,347	+		ABIE40_RS24610	0.50	-0.3
1,072,347	+		ABIE40_RS24610	0.50	-0.4
1,072,348	-		ABIE40_RS24610	0.50	-0.7
1,072,348	-		ABIE40_RS24610	0.50	-1.1
1,072,348	-		ABIE40_RS24610	0.50	+0.1
1,072,349	+		ABIE40_RS24610	0.50	-0.3
1,072,349	+		ABIE40_RS24610	0.50	-0.9
1,072,349	+		ABIE40_RS24610	0.50	-0.9
1,072,349	+		ABIE40_RS24610	0.50	-0.6
1,072,350	-		ABIE40_RS24610	0.50	+1.2
1,072,350	-		ABIE40_RS24610	0.50	-0.4
1,072,475	+		ABIE40_RS24610	0.55	+0.2
1,072,475	+		ABIE40_RS24610	0.55	-1.0
1,072,476	-		ABIE40_RS24610	0.55	+0.4
1,072,476	-		ABIE40_RS24610	0.55	+1.7
1,072,493	+		ABIE40_RS24610	0.55	+0.7
1,072,493	+		ABIE40_RS24610	0.55	-1.9
1,072,493	+		ABIE40_RS24610	0.55	-0.5
1,072,493	+		ABIE40_RS24610	0.55	+0.1
1,072,494	-		ABIE40_RS24610	0.55	-0.6
1,072,494	-		ABIE40_RS24610	0.55	+0.6
1,072,573	+		ABIE40_RS24610	0.58	+2.2
1,072,573	+		ABIE40_RS24610	0.58	-1.2
1,072,573	+		ABIE40_RS24610	0.58	+1.2
1,072,591	-		ABIE40_RS24610	0.59	+0.2
1,072,839	+		ABIE40_RS24610	0.68	-1.5
1,072,839	+		ABIE40_RS24610	0.68	-0.5
1,072,840	-		ABIE40_RS24610	0.68	-0.0
1,072,841	+		ABIE40_RS24610	0.68	-0.2
1,072,841	+		ABIE40_RS24610	0.68	-0.6
1,072,841	+		ABIE40_RS24610	0.68	+0.9
1,072,841	+		ABIE40_RS24610	0.68	+1.2
1,072,842	-		ABIE40_RS24610	0.68	+0.0
1,072,842	-		ABIE40_RS24610	0.68	-0.2
1,072,842	-		ABIE40_RS24610	0.68	+0.3
1,072,842	-		ABIE40_RS24610	0.68	+0.8
1,072,842	-		ABIE40_RS24610	0.68	+0.7
1,072,842	-		ABIE40_RS24610	0.68	+1.6
1,072,889	+		ABIE40_RS24610	0.70	+0.5
1,072,889	+		ABIE40_RS24610	0.70	-1.8
1,072,889	+		ABIE40_RS24610	0.70	+0.1
1,072,889	+		ABIE40_RS24610	0.70	+0.2
1,072,890	-		ABIE40_RS24610	0.70	+0.5
1,072,983	+		ABIE40_RS24610	0.73	+0.2
1,072,983	+		ABIE40_RS24610	0.73	+0.2
1,072,984	-		ABIE40_RS24610	0.73	-0.7
1,073,069	+		ABIE40_RS24610	0.76	-0.2
1,073,069	+		ABIE40_RS24610	0.76	-0.5
1,073,069	+		ABIE40_RS24610	0.76	+0.2
1,073,069	+		ABIE40_RS24610	0.76	+1.0
1,073,069	+		ABIE40_RS24610	0.76	-0.3
1,073,070	-		ABIE40_RS24610	0.76	-0.8
1,073,105	+		ABIE40_RS24610	0.78	-1.6
1,073,105	+		ABIE40_RS24610	0.78	+1.5
1,073,106	-		ABIE40_RS24610	0.78	+1.8
1,073,106	-		ABIE40_RS24610	0.78	-1.6
1,073,106	-		ABIE40_RS24610	0.78	-0.2
1,073,106	-		ABIE40_RS24610	0.78	-1.1
1,073,265	+		ABIE40_RS24610	0.84	-1.9
1,073,279	+		ABIE40_RS24610	0.84	+0.5
1,073,280	-		ABIE40_RS24610	0.84	-0.2
1,073,280	-		ABIE40_RS24610	0.84	-0.8
1,073,280	-		ABIE40_RS24610	0.84	+0.3
1,073,280	-		ABIE40_RS24610	0.84	-0.0
1,073,280	-		ABIE40_RS24610	0.84	+1.8
1,073,280	-		ABIE40_RS24610	0.84	+0.9
1,073,355	+		ABIE40_RS24610	0.87	+0.9
1,073,580	-				-0.6
1,073,723	-				-0.5
1,073,915	+				+0.9
1,073,916	-				-0.3
1,073,916	-				-0.0
1,073,916	-				-2.2
1,073,933	+				+0.2
1,073,934	-				-2.7
1,074,086	+		ABIE40_RS24615	0.32	-0.5
1,074,087	-		ABIE40_RS24615	0.32	-0.8
1,074,087	-		ABIE40_RS24615	0.32	-2.8
1,074,087	-		ABIE40_RS24615	0.32	+0.0
1,074,087	-		ABIE40_RS24615	0.32	+0.6
1,074,087	-		ABIE40_RS24615	0.32	-1.2
1,074,170	-		ABIE40_RS24615	0.47	-0.3
1,074,244	+		ABIE40_RS24615	0.60	-0.3
1,074,244	+		ABIE40_RS24615	0.60	-0.5
1,074,280	+		ABIE40_RS24615	0.66	+0.1
1,074,281	-		ABIE40_RS24615	0.66	-0.4
1,074,407	-		ABIE40_RS24615	0.88	+1.4
1,074,480	+				-0.1
1,074,480	+				-1.8
1,074,480	+				+1.1
1,074,488	-				-0.6
1,074,565	+				-0.9
1,074,565	+				+0.0
1,074,566	-				+0.3