Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20695

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20690 and ABIE40_RS20695 overlap by 4 nucleotidesABIE40_RS20695 and ABIE40_RS20700 are separated by 21 nucleotides ABIE40_RS20690: ABIE40_RS20690 - ABC transporter permease, at 247,617 to 248,564 _RS20690 ABIE40_RS20695: ABIE40_RS20695 - ABC transporter permease, at 248,561 to 249,436 _RS20695 ABIE40_RS20700: ABIE40_RS20700 - gamma-glutamyltransferase family protein, at 249,458 to 251,242 _RS20700 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.626 kb on + strandat 247.626 kb on + strandat 247.626 kb on + strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.673 kb on - strandat 247.673 kb on - strandat 247.765 kb on - strand, within ABIE40_RS20690at 247.780 kb on - strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.851 kb on - strand, within ABIE40_RS20690at 247.926 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 248.004 kb on + strand, within ABIE40_RS20690at 248.004 kb on + strand, within ABIE40_RS20690at 248.250 kb on + strand, within ABIE40_RS20690at 248.250 kb on + strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.452 kb on - strand, within ABIE40_RS20690at 248.452 kb on - strand, within ABIE40_RS20690at 248.560 kb on + strandat 248.604 kb on + strandat 248.605 kb on - strandat 248.605 kb on - strandat 248.801 kb on - strand, within ABIE40_RS20695at 248.886 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.164 kb on + strand, within ABIE40_RS20695at 249.165 kb on - strand, within ABIE40_RS20695at 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.660 kb on - strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.734 kb on + strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.735 kb on - strand, within ABIE40_RS20700at 249.830 kb on + strand, within ABIE40_RS20700at 249.831 kb on - strand, within ABIE40_RS20700at 249.831 kb on - strand, within ABIE40_RS20700at 249.872 kb on + strand, within ABIE40_RS20700at 249.872 kb on + strand, within ABIE40_RS20700at 249.872 kb on + strand, within ABIE40_RS20700at 249.872 kb on + strand, within ABIE40_RS20700at 249.873 kb on - strand, within ABIE40_RS20700at 249.873 kb on - strand, within ABIE40_RS20700at 249.873 kb on - strand, within ABIE40_RS20700at 249.876 kb on - strand, within ABIE40_RS20700at 250.116 kb on - strand, within ABIE40_RS20700at 250.116 kb on - strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.263 kb on - strand, within ABIE40_RS20700at 250.263 kb on - strand, within ABIE40_RS20700at 250.348 kb on + strand, within ABIE40_RS20700at 250.387 kb on + strand, within ABIE40_RS20700at 250.388 kb on - strand, within ABIE40_RS20700at 250.433 kb on + strand, within ABIE40_RS20700at 250.434 kb on - strand, within ABIE40_RS20700at 250.434 kb on - strand, within ABIE40_RS20700at 250.436 kb on + strand, within ABIE40_RS20700

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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247,620 + +0.8
247,620 + +0.1
247,620 + -0.6
247,620 + -0.0
247,620 + +0.2
247,621 - -2.7
247,621 - +0.7
247,621 - -0.2
247,621 - -1.2
247,621 - +0.6
247,621 - -1.6
247,621 - -0.7
247,621 - -0.5
247,621 - -0.0
247,621 - -0.1
247,621 - -0.1
247,621 - +0.4
247,621 - -0.5
247,621 - -0.3
247,621 - -0.8
247,621 - -0.1
247,621 - -0.5
247,621 - +1.9
247,621 - +0.4
247,626 + -0.5
247,626 + -1.0
247,626 + +1.5
247,627 - +0.7
247,627 - +0.6
247,627 - -0.5
247,627 - -0.7
247,627 - -0.6
247,627 - -0.8
247,673 - +0.4
247,673 - +1.0
247,765 - ABIE40_RS20690 0.16 -0.6
247,780 - ABIE40_RS20690 0.17 -0.5
247,809 + ABIE40_RS20690 0.20 +0.2
247,809 + ABIE40_RS20690 0.20 -0.7
247,809 + ABIE40_RS20690 0.20 -0.6
247,809 + ABIE40_RS20690 0.20 -1.9
247,810 - ABIE40_RS20690 0.20 -0.4
247,810 - ABIE40_RS20690 0.20 -1.0
247,810 - ABIE40_RS20690 0.20 +0.8
247,810 - ABIE40_RS20690 0.20 -0.6
247,810 - ABIE40_RS20690 0.20 -1.3
247,810 - ABIE40_RS20690 0.20 -0.3
247,850 + ABIE40_RS20690 0.25 -0.5
247,850 + ABIE40_RS20690 0.25 -0.1
247,850 + ABIE40_RS20690 0.25 -1.4
247,850 + ABIE40_RS20690 0.25 +0.7
247,851 - ABIE40_RS20690 0.25 -1.8
247,926 + ABIE40_RS20690 0.33 -0.7
247,991 + ABIE40_RS20690 0.39 +0.1
247,991 + ABIE40_RS20690 0.39 -2.4
247,991 + ABIE40_RS20690 0.39 -0.3
247,991 + ABIE40_RS20690 0.39 +2.4
247,991 + ABIE40_RS20690 0.39 -0.5
247,991 + ABIE40_RS20690 0.39 -0.1
247,992 - ABIE40_RS20690 0.40 -1.3
247,992 - ABIE40_RS20690 0.40 -0.7
247,992 - ABIE40_RS20690 0.40 +2.4
248,004 + ABIE40_RS20690 0.41 -1.6
248,004 + ABIE40_RS20690 0.41 +0.6
248,250 + ABIE40_RS20690 0.67 -0.2
248,250 + ABIE40_RS20690 0.67 +0.5
248,251 - ABIE40_RS20690 0.67 +0.1
248,251 - ABIE40_RS20690 0.67 -1.8
248,251 - ABIE40_RS20690 0.67 -0.6
248,251 - ABIE40_RS20690 0.67 +0.5
248,251 - ABIE40_RS20690 0.67 +0.3
248,452 - ABIE40_RS20690 0.88 -1.1
248,452 - ABIE40_RS20690 0.88 -0.0
248,560 + -0.2
248,604 + +0.8
248,605 - -0.4
248,605 - -0.7
248,801 - ABIE40_RS20695 0.27 +0.3
248,886 + ABIE40_RS20695 0.37 +0.0
249,110 + ABIE40_RS20695 0.63 -0.7
249,110 + ABIE40_RS20695 0.63 -2.2
249,110 + ABIE40_RS20695 0.63 +2.0
249,110 + ABIE40_RS20695 0.63 -1.2
249,110 + ABIE40_RS20695 0.63 -0.9
249,110 + ABIE40_RS20695 0.63 -0.8
249,111 - ABIE40_RS20695 0.63 -1.4
249,111 - ABIE40_RS20695 0.63 +0.2
249,111 - ABIE40_RS20695 0.63 +1.0
249,164 + ABIE40_RS20695 0.69 -0.7
249,165 - ABIE40_RS20695 0.69 -0.2
249,452 + +1.5
249,452 + +0.2
249,452 + +0.8
249,452 + -1.6
249,452 + -0.7
249,452 + -1.1
249,453 - -0.4
249,453 - +0.5
249,453 - -0.8
249,453 - -0.8
249,453 - +0.1
249,453 - +0.5
249,453 - +2.7
249,453 - +0.4
249,660 - ABIE40_RS20700 0.11 +0.5
249,734 + ABIE40_RS20700 0.15 +0.3
249,734 + ABIE40_RS20700 0.15 +0.8
249,734 + ABIE40_RS20700 0.15 -0.2
249,734 + ABIE40_RS20700 0.15 -2.2
249,734 + ABIE40_RS20700 0.15 -0.2
249,734 + ABIE40_RS20700 0.15 +1.7
249,735 - ABIE40_RS20700 0.16 -0.0
249,735 - ABIE40_RS20700 0.16 +1.4
249,735 - ABIE40_RS20700 0.16 +1.0
249,735 - ABIE40_RS20700 0.16 -1.2
249,735 - ABIE40_RS20700 0.16 -1.3
249,735 - ABIE40_RS20700 0.16 -1.0
249,830 + ABIE40_RS20700 0.21 +0.2
249,831 - ABIE40_RS20700 0.21 -1.4
249,831 - ABIE40_RS20700 0.21 -0.5
249,872 + ABIE40_RS20700 0.23 -0.0
249,872 + ABIE40_RS20700 0.23 +0.1
249,872 + ABIE40_RS20700 0.23 -0.6
249,872 + ABIE40_RS20700 0.23 -1.1
249,873 - ABIE40_RS20700 0.23 -2.0
249,873 - ABIE40_RS20700 0.23 +0.1
249,873 - ABIE40_RS20700 0.23 -0.2
249,876 - ABIE40_RS20700 0.23 -1.0
250,116 - ABIE40_RS20700 0.37 +0.3
250,116 - ABIE40_RS20700 0.37 +0.2
250,256 + ABIE40_RS20700 0.45 -0.6
250,256 + ABIE40_RS20700 0.45 +0.4
250,256 + ABIE40_RS20700 0.45 -0.1
250,256 + ABIE40_RS20700 0.45 +0.2
250,256 + ABIE40_RS20700 0.45 -0.5
250,257 - ABIE40_RS20700 0.45 -0.7
250,257 - ABIE40_RS20700 0.45 -1.4
250,257 - ABIE40_RS20700 0.45 -0.7
250,257 - ABIE40_RS20700 0.45 +0.8
250,257 - ABIE40_RS20700 0.45 -0.0
250,257 - ABIE40_RS20700 0.45 +0.8
250,262 + ABIE40_RS20700 0.45 -0.8
250,262 + ABIE40_RS20700 0.45 +0.9
250,262 + ABIE40_RS20700 0.45 -1.0
250,263 - ABIE40_RS20700 0.45 -1.1
250,263 - ABIE40_RS20700 0.45 -1.1
250,348 + ABIE40_RS20700 0.50 +0.4
250,387 + ABIE40_RS20700 0.52 -1.2
250,388 - ABIE40_RS20700 0.52 +0.7
250,433 + ABIE40_RS20700 0.55 -0.0
250,434 - ABIE40_RS20700 0.55 -0.1
250,434 - ABIE40_RS20700 0.55 -0.1
250,436 + ABIE40_RS20700 0.55 -0.7

Or see this region's nucleotide sequence