Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08550

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
1,645,071	+		ABIE40_RS08540	0.71	-0.2
1,645,072	-		ABIE40_RS08540	0.71	-0.6
1,645,268	+		ABIE40_RS08540	0.87	+1.2
1,645,268	+		ABIE40_RS08540	0.87	+0.3
1,645,269	-		ABIE40_RS08540	0.87	-0.3
1,645,269	-		ABIE40_RS08540	0.87	-0.8
1,645,269	-		ABIE40_RS08540	0.87	+0.4
1,645,270	+		ABIE40_RS08540	0.87	+1.1
1,645,270	+		ABIE40_RS08540	0.87	+1.0
1,645,270	+		ABIE40_RS08540	0.87	-0.7
1,645,270	+		ABIE40_RS08540	0.87	+1.0
1,645,270	+		ABIE40_RS08540	0.87	+1.4
1,645,271	-		ABIE40_RS08540	0.87	-0.3
1,645,271	-		ABIE40_RS08540	0.87	-0.5
1,645,271	-		ABIE40_RS08540	0.87	-0.1
1,645,271	-		ABIE40_RS08540	0.87	+0.1
1,645,271	-		ABIE40_RS08540	0.87	+0.2
1,645,271	-		ABIE40_RS08540	0.87	-1.1
1,645,271	-		ABIE40_RS08540	0.87	+0.0
1,645,325	+				-0.5
1,645,325	+				-1.4
1,645,325	+				-2.0
1,645,325	+				+0.7
1,645,325	+				-0.3
1,645,325	+				+0.7
1,645,325	+				-0.1
1,645,326	-				-2.5
1,645,326	-				+0.3
1,645,326	-				+0.2
1,645,326	-				+0.8
1,645,326	-				+0.3
1,645,381	-				-0.8
1,645,424	+				-0.1
1,645,424	+				-1.3
1,645,424	+				+0.8
1,645,424	+				+0.3
1,645,424	+				-1.5
1,645,425	-				-0.8
1,645,425	-				+0.7
1,645,425	-				-0.4
1,645,425	-				+0.5
1,645,425	-				+0.2
1,645,425	-				+0.7
1,645,425	-				+0.6
1,645,428	+				-1.8
1,645,428	+				+2.0
1,645,429	-				+0.9
1,645,429	-				+0.8
1,645,628	+		ABIE40_RS08545	0.42	-0.6
1,645,628	+		ABIE40_RS08545	0.42	+0.3
1,645,628	+		ABIE40_RS08545	0.42	-0.7
1,645,628	+		ABIE40_RS08545	0.42	+0.9
1,645,629	-		ABIE40_RS08545	0.42	+0.5
1,645,629	-		ABIE40_RS08545	0.42	-1.4
1,645,643	+		ABIE40_RS08545	0.45	+0.4
1,645,643	+		ABIE40_RS08545	0.45	+1.4
1,645,643	+		ABIE40_RS08545	0.45	-0.2
1,645,643	+		ABIE40_RS08545	0.45	-0.2
1,645,644	-		ABIE40_RS08545	0.45	+0.1
1,645,644	-		ABIE40_RS08545	0.45	+0.5
1,645,835	+		ABIE40_RS08545	0.84	-0.7
1,645,835	+		ABIE40_RS08545	0.84	+2.4
1,645,835	+		ABIE40_RS08545	0.84	-0.7
1,645,835	+		ABIE40_RS08545	0.84	+0.0
1,645,835	+		ABIE40_RS08545	0.84	-0.5
1,645,835	+		ABIE40_RS08545	0.84	+1.0
1,645,836	-		ABIE40_RS08545	0.84	+1.5
1,645,836	-		ABIE40_RS08545	0.84	-1.5
1,645,836	-		ABIE40_RS08545	0.84	-0.4
1,645,868	+				-1.5
1,645,868	+				+0.1
1,645,868	+				+2.4
1,645,868	+				-0.2
1,645,868	+				+1.0
1,645,869	-				+0.3
1,645,869	-				+0.0
1,645,914	+				-1.4
1,645,915	-				-0.1
1,645,949	+				-1.2
1,645,949	+				+0.5
1,645,949	+				+0.0
1,645,950	-				+3.4
1,645,975	+				+0.4
1,645,976	-				-0.5
1,645,976	-				+0.5
1,645,976	-				+0.3
1,645,987	-				-1.3
1,645,989	+				+1.4
1,645,989	+				+0.1
1,645,990	-				-0.2
1,645,991	+				+0.2
1,645,991	+				-0.9
1,645,992	-				-0.4
1,645,992	-				-0.7
1,646,047	+				-1.0
1,646,047	+				+1.6
1,646,047	+				-0.2
1,646,048	-				+0.4
1,646,048	-				+2.0
1,646,048	-				+1.5
1,646,048	-				-0.7
1,646,048	-				+0.4
1,646,048	-				+1.0
1,646,048	-				-0.2
1,646,048	-				+0.5
1,646,049	+				+1.4
1,646,049	+				-1.5
1,646,049	+				+2.0
1,646,049	+				-2.3
1,646,049	+				+0.7
1,646,050	-				-0.7
1,646,050	-				+0.5
1,646,050	-				+0.4
1,646,050	-				-2.0
1,646,050	-				-0.8
1,646,050	-				+0.4
1,646,114	+				+0.5
1,646,164	+		ABIE40_RS08550	0.12	+0.8
1,646,165	-		ABIE40_RS08550	0.12	-0.5
1,646,166	+		ABIE40_RS08550	0.13	-1.7
1,646,166	+		ABIE40_RS08550	0.13	-1.0
1,646,166	+		ABIE40_RS08550	0.13	-0.1
1,646,166	+		ABIE40_RS08550	0.13	+0.0
1,646,167	-		ABIE40_RS08550	0.13	+0.9
1,646,167	-		ABIE40_RS08550	0.13	-0.5
1,646,220	+		ABIE40_RS08550	0.17	+0.1
1,646,220	+		ABIE40_RS08550	0.17	-1.9
1,646,220	+		ABIE40_RS08550	0.17	+0.5
1,646,220	+		ABIE40_RS08550	0.17	+1.9
1,646,220	+		ABIE40_RS08550	0.17	-0.2
1,646,220	+		ABIE40_RS08550	0.17	+0.3
1,646,221	-		ABIE40_RS08550	0.17	-0.8
1,646,221	-		ABIE40_RS08550	0.17	-0.0
1,646,221	-		ABIE40_RS08550	0.17	+0.0
1,646,221	-		ABIE40_RS08550	0.17	-1.6
1,646,240	+		ABIE40_RS08550	0.18	+0.2
1,646,295	-		ABIE40_RS08550	0.22	-1.7
1,646,348	+		ABIE40_RS08550	0.26	-1.5
1,646,348	+		ABIE40_RS08550	0.26	+0.8
1,646,348	+		ABIE40_RS08550	0.26	+1.0
1,646,348	+		ABIE40_RS08550	0.26	-0.2
1,646,348	+		ABIE40_RS08550	0.26	-0.0
1,646,349	-		ABIE40_RS08550	0.26	+0.3
1,646,349	-		ABIE40_RS08550	0.26	+2.0
1,646,412	+		ABIE40_RS08550	0.31	+0.7
1,646,412	+		ABIE40_RS08550	0.31	-0.5
1,646,412	+		ABIE40_RS08550	0.31	-0.4
1,646,412	+		ABIE40_RS08550	0.31	-0.7
1,646,412	+		ABIE40_RS08550	0.31	-1.2
1,646,412	+		ABIE40_RS08550	0.31	-1.1
1,646,413	-		ABIE40_RS08550	0.31	+0.1
1,646,413	-		ABIE40_RS08550	0.31	-0.5
1,646,413	-		ABIE40_RS08550	0.31	+0.6
1,646,413	-		ABIE40_RS08550	0.31	-0.5
1,646,415	+		ABIE40_RS08550	0.31	+0.3
1,646,416	-		ABIE40_RS08550	0.31	+0.7
1,646,416	-		ABIE40_RS08550	0.31	-1.7
1,646,416	-		ABIE40_RS08550	0.31	-0.2
1,646,416	-		ABIE40_RS08550	0.31	-1.6
1,646,638	+		ABIE40_RS08550	0.48	+2.5
1,646,695	+		ABIE40_RS08550	0.52	+0.4
1,646,695	+		ABIE40_RS08550	0.52	+0.3
1,646,696	-		ABIE40_RS08550	0.52	+0.5
1,646,696	-		ABIE40_RS08550	0.52	-1.1
1,646,696	-		ABIE40_RS08550	0.52	+1.0
1,646,698	-		ABIE40_RS08550	0.52	+0.5
1,646,698	-		ABIE40_RS08550	0.52	+0.2
1,646,782	+		ABIE40_RS08550	0.58	-0.6
1,646,782	+		ABIE40_RS08550	0.58	-0.7
1,646,784	+		ABIE40_RS08550	0.58	+1.0
1,646,785	-		ABIE40_RS08550	0.59	+0.5
1,646,785	-		ABIE40_RS08550	0.59	-1.0
1,646,793	+		ABIE40_RS08550	0.59	-0.1
1,646,793	+		ABIE40_RS08550	0.59	-1.8
1,646,793	+		ABIE40_RS08550	0.59	+0.8
1,646,793	+		ABIE40_RS08550	0.59	-1.1
1,646,825	+		ABIE40_RS08550	0.61	-0.7
1,646,826	-		ABIE40_RS08550	0.62	-2.4
1,647,015	+		ABIE40_RS08550	0.76	-0.4
1,647,236	+				-1.1
1,647,236	+				-2.3
1,647,236	+				+0.3
1,647,236	+				+0.5
1,647,236	+				+1.0
1,647,236	+				+0.3
1,647,237	-				-0.2
1,647,237	-				-0.4
1,647,295	+				+0.4
1,647,295	+				-0.5
1,647,296	-				+1.0
1,647,296	-				+0.0
1,647,297	+				+1.6
1,647,297	+				+0.0
1,647,298	-				-0.8
1,647,298	-				-2.0
1,647,447	+				+0.2
1,647,447	+				-0.1
1,647,447	+				+2.0
1,647,448	-				+0.1
1,647,448	-				-0.6
1,647,448	-				-0.4
1,647,448	-				-0.9
1,647,448	-				+0.9
1,647,454	+				+0.7
1,647,454	+				-0.5
1,647,454	+				+0.3
1,647,454	+				-3.1
1,647,454	+				-1.1
1,647,454	+				-0.4
1,647,455	-				+2.0
1,647,455	-				-1.0
1,647,455	-				-0.5
1,647,695	+		ABIE40_RS08555	0.14	+0.2
1,647,696	-		ABIE40_RS08555	0.14	-1.0
1,647,752	+		ABIE40_RS08555	0.17	-0.4
1,647,752	+		ABIE40_RS08555	0.17	+0.8
1,647,752	+		ABIE40_RS08555	0.17	-0.0
1,647,752	+		ABIE40_RS08555	0.17	-1.5
1,647,792	+		ABIE40_RS08555	0.18	-0.5
1,647,792	+		ABIE40_RS08555	0.18	+0.0
1,647,793	-		ABIE40_RS08555	0.18	-0.2
1,647,840	-		ABIE40_RS08555	0.20	-0.7
1,647,840	-		ABIE40_RS08555	0.20	+0.5
1,647,840	-		ABIE40_RS08555	0.20	-0.0
1,648,154	+		ABIE40_RS08555	0.33	-1.3
1,648,154	+		ABIE40_RS08555	0.33	-0.6