Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06295

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06285 and ABIE40_RS06290 are separated by 133 nucleotidesABIE40_RS06290 and ABIE40_RS06295 are separated by 3 nucleotidesABIE40_RS06295 and ABIE40_RS06300 are separated by 94 nucleotidesABIE40_RS06300 and ABIE40_RS06305 overlap by 4 nucleotidesABIE40_RS06305 and ABIE40_RS06310 are separated by 64 nucleotides ABIE40_RS06285: ABIE40_RS06285 - PDZ domain-containing protein, at 1,231,564 to 1,232,253 _RS06285 ABIE40_RS06290: ABIE40_RS06290 - LysE family translocator, at 1,232,387 to 1,233,022 _RS06290 ABIE40_RS06295: ABIE40_RS06295 - alanine racemase, at 1,233,026 to 1,234,198 _RS06295 ABIE40_RS06300: ABIE40_RS06300 - transcriptional regulator, at 1,234,293 to 1,234,655 _RS06300 ABIE40_RS06305: ABIE40_RS06305 - DUF6516 family protein, at 1,234,652 to 1,234,930 _RS06305 ABIE40_RS06310: ABIE40_RS06310 - replicative DNA helicase, at 1,234,995 to 1,236,488 _RS06310 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.065 kb on + strand, within ABIE40_RS06285at 1232.102 kb on - strand, within ABIE40_RS06285at 1232.199 kb on + strandat 1232.199 kb on + strandat 1232.200 kb on - strandat 1232.252 kb on - strandat 1232.334 kb on + strandat 1232.367 kb on + strandat 1232.368 kb on - strandat 1232.368 kb on - strandat 1232.368 kb on - strandat 1232.368 kb on - strandat 1232.485 kb on + strand, within ABIE40_RS06290at 1232.485 kb on + strand, within ABIE40_RS06290at 1232.486 kb on - strand, within ABIE40_RS06290at 1232.486 kb on - strand, within ABIE40_RS06290at 1232.486 kb on - strand, within ABIE40_RS06290at 1232.486 kb on - strand, within ABIE40_RS06290at 1232.556 kb on + strand, within ABIE40_RS06290at 1232.556 kb on + strand, within ABIE40_RS06290at 1232.556 kb on + strand, within ABIE40_RS06290at 1232.556 kb on + strand, within ABIE40_RS06290at 1232.556 kb on + strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.557 kb on - strand, within ABIE40_RS06290at 1232.639 kb on + strand, within ABIE40_RS06290at 1232.639 kb on + strand, within ABIE40_RS06290at 1232.640 kb on - strand, within ABIE40_RS06290at 1232.640 kb on - strand, within ABIE40_RS06290at 1232.733 kb on - strand, within ABIE40_RS06290at 1233.027 kb on + strandat 1233.027 kb on + strandat 1233.027 kb on + strandat 1233.027 kb on + strandat 1233.027 kb on + strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.028 kb on - strandat 1233.045 kb on + strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.244 kb on - strand, within ABIE40_RS06295at 1233.244 kb on - strand, within ABIE40_RS06295at 1233.321 kb on + strand, within ABIE40_RS06295at 1233.321 kb on + strand, within ABIE40_RS06295at 1233.321 kb on + strand, within ABIE40_RS06295at 1233.322 kb on - strand, within ABIE40_RS06295at 1233.334 kb on - strand, within ABIE40_RS06295at 1233.390 kb on + strand, within ABIE40_RS06295at 1233.390 kb on + strand, within ABIE40_RS06295at 1233.390 kb on + strand, within ABIE40_RS06295at 1233.498 kb on + strand, within ABIE40_RS06295at 1233.499 kb on - strand, within ABIE40_RS06295at 1233.591 kb on + strand, within ABIE40_RS06295at 1233.592 kb on - strand, within ABIE40_RS06295at 1233.592 kb on - strand, within ABIE40_RS06295at 1233.592 kb on - strand, within ABIE40_RS06295at 1233.740 kb on + strand, within ABIE40_RS06295at 1233.740 kb on + strand, within ABIE40_RS06295at 1233.741 kb on - strand, within ABIE40_RS06295at 1233.741 kb on - strand, within ABIE40_RS06295at 1233.741 kb on - strand, within ABIE40_RS06295at 1233.741 kb on - strand, within ABIE40_RS06295at 1233.741 kb on - strand, within ABIE40_RS06295at 1233.793 kb on - strand, within ABIE40_RS06295at 1233.937 kb on - strand, within ABIE40_RS06295at 1233.997 kb on + strand, within ABIE40_RS06295at 1233.997 kb on + strand, within ABIE40_RS06295at 1233.997 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1233.999 kb on + strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.000 kb on - strand, within ABIE40_RS06295at 1234.035 kb on + strand, within ABIE40_RS06295at 1234.035 kb on + strand, within ABIE40_RS06295at 1234.035 kb on + strand, within ABIE40_RS06295at 1234.206 kb on - strandat 1234.235 kb on + strandat 1234.235 kb on + strandat 1234.235 kb on + strandat 1234.236 kb on - strandat 1234.236 kb on - strandat 1234.305 kb on - strandat 1234.673 kb on + strandat 1234.674 kb on - strandat 1234.674 kb on - strandat 1234.674 kb on - strandat 1234.785 kb on + strand, within ABIE40_RS06305at 1234.810 kb on - strand, within ABIE40_RS06305at 1234.815 kb on + strand, within ABIE40_RS06305at 1234.816 kb on - strand, within ABIE40_RS06305at 1234.816 kb on - strand, within ABIE40_RS06305at 1234.816 kb on - strand, within ABIE40_RS06305at 1234.816 kb on - strand, within ABIE40_RS06305at 1234.820 kb on + strand, within ABIE40_RS06305at 1234.820 kb on + strand, within ABIE40_RS06305at 1234.820 kb on + strand, within ABIE40_RS06305at 1234.820 kb on + strand, within ABIE40_RS06305at 1234.820 kb on + strand, within ABIE40_RS06305at 1234.821 kb on - strand, within ABIE40_RS06305at 1234.821 kb on - strand, within ABIE40_RS06305at 1234.821 kb on - strand, within ABIE40_RS06305at 1234.821 kb on - strand, within ABIE40_RS06305at 1234.827 kb on + strand, within ABIE40_RS06305at 1234.827 kb on + strand, within ABIE40_RS06305at 1234.827 kb on + strand, within ABIE40_RS06305at 1234.827 kb on + strand, within ABIE40_RS06305at 1234.827 kb on + strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.828 kb on - strand, within ABIE40_RS06305at 1234.833 kb on + strand, within ABIE40_RS06305at 1234.833 kb on + strand, within ABIE40_RS06305at 1234.833 kb on + strand, within ABIE40_RS06305at 1234.833 kb on + strand, within ABIE40_RS06305at 1234.834 kb on - strand, within ABIE40_RS06305

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,232,065 + ABIE40_RS06285 0.73 +0.4
1,232,065 + ABIE40_RS06285 0.73 -1.3
1,232,065 + ABIE40_RS06285 0.73 +0.3
1,232,065 + ABIE40_RS06285 0.73 -1.1
1,232,065 + ABIE40_RS06285 0.73 +0.3
1,232,065 + ABIE40_RS06285 0.73 -0.4
1,232,065 + ABIE40_RS06285 0.73 -0.3
1,232,065 + ABIE40_RS06285 0.73 +1.2
1,232,102 - ABIE40_RS06285 0.78 +1.3
1,232,199 + +0.5
1,232,199 + +1.3
1,232,200 - +1.0
1,232,252 - +0.5
1,232,334 + +0.5
1,232,367 + -0.0
1,232,368 - +1.5
1,232,368 - +1.0
1,232,368 - -0.8
1,232,368 - -0.4
1,232,485 + ABIE40_RS06290 0.15 -0.0
1,232,485 + ABIE40_RS06290 0.15 +0.0
1,232,486 - ABIE40_RS06290 0.16 +1.1
1,232,486 - ABIE40_RS06290 0.16 -1.5
1,232,486 - ABIE40_RS06290 0.16 -0.7
1,232,486 - ABIE40_RS06290 0.16 +1.9
1,232,556 + ABIE40_RS06290 0.27 +1.9
1,232,556 + ABIE40_RS06290 0.27 +0.2
1,232,556 + ABIE40_RS06290 0.27 -0.5
1,232,556 + ABIE40_RS06290 0.27 +0.8
1,232,556 + ABIE40_RS06290 0.27 +0.8
1,232,557 - ABIE40_RS06290 0.27 +1.5
1,232,557 - ABIE40_RS06290 0.27 -1.2
1,232,557 - ABIE40_RS06290 0.27 -0.0
1,232,557 - ABIE40_RS06290 0.27 -2.1
1,232,557 - ABIE40_RS06290 0.27 -1.1
1,232,557 - ABIE40_RS06290 0.27 +0.5
1,232,639 + ABIE40_RS06290 0.40 -0.7
1,232,639 + ABIE40_RS06290 0.40 -0.5
1,232,640 - ABIE40_RS06290 0.40 +0.6
1,232,640 - ABIE40_RS06290 0.40 -1.1
1,232,733 - ABIE40_RS06290 0.54 +0.0
1,233,027 + -2.9
1,233,027 + -0.3
1,233,027 + -1.6
1,233,027 + -0.1
1,233,027 + -0.1
1,233,028 - +0.1
1,233,028 - -0.5
1,233,028 - +0.7
1,233,028 - +0.2
1,233,028 - +0.2
1,233,028 - +0.7
1,233,028 - -1.0
1,233,028 - +0.8
1,233,045 + +0.7
1,233,046 - +0.2
1,233,046 - -0.4
1,233,046 - +0.2
1,233,244 - ABIE40_RS06295 0.19 -2.1
1,233,244 - ABIE40_RS06295 0.19 -0.5
1,233,321 + ABIE40_RS06295 0.25 -1.5
1,233,321 + ABIE40_RS06295 0.25 +3.0
1,233,321 + ABIE40_RS06295 0.25 +0.1
1,233,322 - ABIE40_RS06295 0.25 -2.4
1,233,334 - ABIE40_RS06295 0.26 -0.5
1,233,390 + ABIE40_RS06295 0.31 +1.2
1,233,390 + ABIE40_RS06295 0.31 +0.4
1,233,390 + ABIE40_RS06295 0.31 -0.7
1,233,498 + ABIE40_RS06295 0.40 +1.2
1,233,499 - ABIE40_RS06295 0.40 -0.1
1,233,591 + ABIE40_RS06295 0.48 +0.7
1,233,592 - ABIE40_RS06295 0.48 +0.8
1,233,592 - ABIE40_RS06295 0.48 +0.3
1,233,592 - ABIE40_RS06295 0.48 -1.3
1,233,740 + ABIE40_RS06295 0.61 +0.4
1,233,740 + ABIE40_RS06295 0.61 -0.8
1,233,741 - ABIE40_RS06295 0.61 -0.1
1,233,741 - ABIE40_RS06295 0.61 +0.3
1,233,741 - ABIE40_RS06295 0.61 +1.0
1,233,741 - ABIE40_RS06295 0.61 -0.0
1,233,741 - ABIE40_RS06295 0.61 +0.5
1,233,793 - ABIE40_RS06295 0.65 -3.1
1,233,937 - ABIE40_RS06295 0.78 -1.4
1,233,997 + ABIE40_RS06295 0.83 +1.0
1,233,997 + ABIE40_RS06295 0.83 -0.4
1,233,997 + ABIE40_RS06295 0.83 +0.6
1,233,999 + ABIE40_RS06295 0.83 +2.7
1,233,999 + ABIE40_RS06295 0.83 +0.0
1,233,999 + ABIE40_RS06295 0.83 +0.4
1,233,999 + ABIE40_RS06295 0.83 +0.2
1,233,999 + ABIE40_RS06295 0.83 +0.5
1,233,999 + ABIE40_RS06295 0.83 -0.4
1,234,000 - ABIE40_RS06295 0.83 -1.0
1,234,000 - ABIE40_RS06295 0.83 +0.6
1,234,000 - ABIE40_RS06295 0.83 -0.9
1,234,000 - ABIE40_RS06295 0.83 -0.3
1,234,000 - ABIE40_RS06295 0.83 +1.0
1,234,000 - ABIE40_RS06295 0.83 +0.0
1,234,000 - ABIE40_RS06295 0.83 -0.3
1,234,035 + ABIE40_RS06295 0.86 +0.2
1,234,035 + ABIE40_RS06295 0.86 -0.6
1,234,035 + ABIE40_RS06295 0.86 -0.9
1,234,206 - +0.2
1,234,235 + +0.7
1,234,235 + +0.6
1,234,235 + -1.0
1,234,236 - -0.5
1,234,236 - +0.2
1,234,305 - -0.6
1,234,673 + -0.7
1,234,674 - +0.6
1,234,674 - +0.3
1,234,674 - +1.5
1,234,785 + ABIE40_RS06305 0.48 +0.6
1,234,810 - ABIE40_RS06305 0.57 +0.7
1,234,815 + ABIE40_RS06305 0.58 -0.0
1,234,816 - ABIE40_RS06305 0.59 -0.5
1,234,816 - ABIE40_RS06305 0.59 -0.4
1,234,816 - ABIE40_RS06305 0.59 +0.6
1,234,816 - ABIE40_RS06305 0.59 -1.1
1,234,820 + ABIE40_RS06305 0.60 +0.4
1,234,820 + ABIE40_RS06305 0.60 -0.6
1,234,820 + ABIE40_RS06305 0.60 +0.4
1,234,820 + ABIE40_RS06305 0.60 -0.0
1,234,820 + ABIE40_RS06305 0.60 -0.3
1,234,821 - ABIE40_RS06305 0.61 -0.4
1,234,821 - ABIE40_RS06305 0.61 +1.3
1,234,821 - ABIE40_RS06305 0.61 -2.0
1,234,821 - ABIE40_RS06305 0.61 -2.7
1,234,827 + ABIE40_RS06305 0.63 -0.3
1,234,827 + ABIE40_RS06305 0.63 +0.3
1,234,827 + ABIE40_RS06305 0.63 -0.2
1,234,827 + ABIE40_RS06305 0.63 +0.3
1,234,827 + ABIE40_RS06305 0.63 -0.0
1,234,828 - ABIE40_RS06305 0.63 -0.0
1,234,828 - ABIE40_RS06305 0.63 -1.7
1,234,828 - ABIE40_RS06305 0.63 -1.5
1,234,828 - ABIE40_RS06305 0.63 -1.6
1,234,828 - ABIE40_RS06305 0.63 +0.9
1,234,828 - ABIE40_RS06305 0.63 +1.9
1,234,833 + ABIE40_RS06305 0.65 +0.9
1,234,833 + ABIE40_RS06305 0.65 -0.7
1,234,833 + ABIE40_RS06305 0.65 -0.2
1,234,833 + ABIE40_RS06305 0.65 -2.1
1,234,834 - ABIE40_RS06305 0.65 +0.6

Or see this region's nucleotide sequence