Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17435

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17425 and ABID97_RS17430 are separated by 410 nucleotidesABID97_RS17430 and ABID97_RS17435 overlap by 4 nucleotidesABID97_RS17435 and ABID97_RS17440 are separated by 239 nucleotides ABID97_RS17425: ABID97_RS17425 - TonB-dependent receptor, at 3,600,073 to 3,602,010 _RS17425 ABID97_RS17430: ABID97_RS17430 - DUF904 domain-containing protein, at 3,602,421 to 3,602,645 _RS17430 ABID97_RS17435: ABID97_RS17435 - cell division protein ZapA, at 3,602,642 to 3,602,998 _RS17435 ABID97_RS17440: ABID97_RS17440 - sulfite exporter TauE/SafE family protein, at 3,603,238 to 3,604,101 _RS17440 Position (kb) 3602 3603Strain fitness (log2 ratio) -1 0 1 2at 3602.031 kb on + strandat 3602.128 kb on - strandat 3602.349 kb on + strandat 3602.407 kb on + strandat 3602.407 kb on + strandat 3602.407 kb on + strandat 3602.407 kb on + strandat 3602.408 kb on - strandat 3602.408 kb on - strandat 3602.408 kb on - strandat 3602.408 kb on - strandat 3602.678 kb on + strand, within ABID97_RS17435at 3602.678 kb on + strand, within ABID97_RS17435at 3602.679 kb on - strand, within ABID97_RS17435at 3602.679 kb on - strand, within ABID97_RS17435at 3602.956 kb on + strand, within ABID97_RS17435at 3602.956 kb on + strand, within ABID97_RS17435at 3602.991 kb on + strandat 3602.992 kb on - strandat 3602.992 kb on - strandat 3603.063 kb on + strandat 3603.064 kb on - strandat 3603.064 kb on - strandat 3603.101 kb on + strandat 3603.883 kb on + strand, within ABID97_RS17440at 3603.884 kb on - strand, within ABID97_RS17440at 3603.884 kb on - strand, within ABID97_RS17440at 3603.884 kb on - strand, within ABID97_RS17440at 3603.935 kb on - strand, within ABID97_RS17440at 3603.935 kb on - strand, within ABID97_RS17440

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,602,031 + +0.5
3,602,128 - +0.2
3,602,349 + +0.4
3,602,407 + +0.0
3,602,407 + -1.0
3,602,407 + -0.0
3,602,407 + +2.4
3,602,408 - -0.1
3,602,408 - -0.2
3,602,408 - -0.9
3,602,408 - -0.7
3,602,678 + ABID97_RS17435 0.10 +0.7
3,602,678 + ABID97_RS17435 0.10 +0.1
3,602,679 - ABID97_RS17435 0.10 +0.8
3,602,679 - ABID97_RS17435 0.10 +1.3
3,602,956 + ABID97_RS17435 0.88 +0.7
3,602,956 + ABID97_RS17435 0.88 +0.5
3,602,991 + -0.3
3,602,992 - +0.2
3,602,992 - +0.3
3,603,063 + +0.5
3,603,064 - +0.1
3,603,064 - +0.4
3,603,101 + +1.4
3,603,883 + ABID97_RS17440 0.75 -0.0
3,603,884 - ABID97_RS17440 0.75 +0.4
3,603,884 - ABID97_RS17440 0.75 +0.1
3,603,884 - ABID97_RS17440 0.75 -0.5
3,603,935 - ABID97_RS17440 0.81 -0.3
3,603,935 - ABID97_RS17440 0.81 +0.3

Or see this region's nucleotide sequence