Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_25060 and IAI46_25065 are separated by 24 nucleotides IAI46_25065 and IAI46_25070 are separated by 6 nucleotides IAI46_25070 and IAI46_25075 are separated by 7 nucleotides IAI46_25075 and IAI46_25080 are separated by 300 nucleotides
IAI46_25060: IAI46_25060 - ribose ABC transporter substrate-binding protein RbsB, at 5,350,341 to 5,351,228
_25060
IAI46_25065: IAI46_25065 - ribose ABC transporter permease, at 5,351,253 to 5,352,218
_25065
IAI46_25070: IAI46_25070 - ribose ABC transporter ATP-binding protein RbsA, at 5,352,225 to 5,353,730
_25070
IAI46_25075: IAI46_25075 - D-ribose pyranase, at 5,353,738 to 5,354,157
_25075
IAI46_25080: IAI46_25080 - low affinity potassium transporter Kup, at 5,354,458 to 5,356,326
_25080
Position (kb) 5352
5353
5354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5351.243 kb on + strand at 5351.243 kb on + strand at 5351.243 kb on + strand at 5351.244 kb on - strand at 5351.254 kb on + strand at 5351.255 kb on - strand at 5351.293 kb on - strand at 5351.323 kb on + strand at 5351.324 kb on - strand at 5351.324 kb on - strand at 5351.324 kb on - strand at 5351.340 kb on + strand at 5351.391 kb on - strand, within IAI46_25065 at 5351.551 kb on + strand, within IAI46_25065 at 5351.552 kb on - strand, within IAI46_25065 at 5351.552 kb on - strand, within IAI46_25065 at 5351.623 kb on + strand, within IAI46_25065 at 5351.623 kb on + strand, within IAI46_25065 at 5351.624 kb on - strand, within IAI46_25065 at 5351.627 kb on + strand, within IAI46_25065 at 5351.627 kb on + strand, within IAI46_25065 at 5351.627 kb on + strand, within IAI46_25065 at 5351.627 kb on + strand, within IAI46_25065 at 5351.628 kb on - strand, within IAI46_25065 at 5351.628 kb on - strand, within IAI46_25065 at 5351.628 kb on - strand, within IAI46_25065 at 5351.630 kb on - strand, within IAI46_25065 at 5351.646 kb on - strand, within IAI46_25065 at 5351.659 kb on + strand, within IAI46_25065 at 5351.659 kb on + strand, within IAI46_25065 at 5351.659 kb on + strand, within IAI46_25065 at 5351.660 kb on - strand, within IAI46_25065 at 5351.660 kb on - strand, within IAI46_25065 at 5351.660 kb on - strand, within IAI46_25065 at 5351.672 kb on + strand, within IAI46_25065 at 5351.697 kb on - strand, within IAI46_25065 at 5351.760 kb on - strand, within IAI46_25065 at 5351.791 kb on + strand, within IAI46_25065 at 5351.791 kb on + strand, within IAI46_25065 at 5351.791 kb on + strand, within IAI46_25065 at 5351.792 kb on - strand, within IAI46_25065 at 5351.792 kb on - strand, within IAI46_25065 at 5351.880 kb on - strand, within IAI46_25065 at 5352.048 kb on - strand, within IAI46_25065 at 5352.077 kb on + strand, within IAI46_25065 at 5352.078 kb on - strand, within IAI46_25065 at 5352.078 kb on - strand, within IAI46_25065 at 5352.089 kb on + strand, within IAI46_25065 at 5352.090 kb on - strand, within IAI46_25065 at 5352.093 kb on + strand, within IAI46_25065 at 5352.093 kb on + strand, within IAI46_25065 at 5352.093 kb on + strand, within IAI46_25065 at 5352.094 kb on - strand, within IAI46_25065 at 5352.094 kb on - strand, within IAI46_25065 at 5352.169 kb on - strand at 5352.182 kb on + strand at 5352.183 kb on - strand at 5352.218 kb on + strand at 5352.219 kb on - strand at 5352.226 kb on + strand at 5352.226 kb on + strand at 5352.237 kb on + strand at 5352.245 kb on - strand at 5352.245 kb on - strand at 5352.417 kb on - strand, within IAI46_25070 at 5352.420 kb on + strand, within IAI46_25070 at 5352.420 kb on + strand, within IAI46_25070 at 5352.420 kb on + strand, within IAI46_25070 at 5352.421 kb on - strand, within IAI46_25070 at 5352.428 kb on - strand, within IAI46_25070 at 5352.428 kb on - strand, within IAI46_25070 at 5352.738 kb on - strand, within IAI46_25070 at 5352.739 kb on + strand, within IAI46_25070 at 5352.739 kb on + strand, within IAI46_25070 at 5352.739 kb on + strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.740 kb on - strand, within IAI46_25070 at 5352.911 kb on + strand, within IAI46_25070 at 5352.911 kb on + strand, within IAI46_25070 at 5352.911 kb on + strand, within IAI46_25070 at 5352.911 kb on + strand, within IAI46_25070 at 5352.912 kb on - strand, within IAI46_25070 at 5353.030 kb on - strand, within IAI46_25070 at 5353.074 kb on - strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.144 kb on + strand, within IAI46_25070 at 5353.145 kb on - strand, within IAI46_25070 at 5353.145 kb on - strand, within IAI46_25070 at 5353.145 kb on - strand, within IAI46_25070 at 5353.188 kb on - strand, within IAI46_25070 at 5353.191 kb on + strand, within IAI46_25070 at 5353.239 kb on - strand, within IAI46_25070 at 5353.375 kb on + strand, within IAI46_25070 at 5353.375 kb on + strand, within IAI46_25070 at 5353.375 kb on + strand, within IAI46_25070 at 5353.375 kb on + strand, within IAI46_25070 at 5353.376 kb on - strand, within IAI46_25070 at 5353.376 kb on - strand, within IAI46_25070 at 5353.376 kb on - strand, within IAI46_25070 at 5353.403 kb on + strand, within IAI46_25070 at 5353.449 kb on + strand, within IAI46_25070 at 5353.450 kb on - strand, within IAI46_25070 at 5353.450 kb on - strand, within IAI46_25070 at 5353.546 kb on + strand, within IAI46_25070 at 5353.547 kb on - strand, within IAI46_25070 at 5353.569 kb on - strand, within IAI46_25070 at 5353.570 kb on + strand, within IAI46_25070 at 5353.697 kb on + strand at 5353.720 kb on - strand at 5353.720 kb on - strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.730 kb on + strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.731 kb on - strand at 5353.748 kb on - strand at 5353.748 kb on - strand at 5353.775 kb on + strand at 5353.775 kb on + strand at 5353.831 kb on - strand, within IAI46_25075 at 5353.849 kb on - strand, within IAI46_25075 at 5353.850 kb on + strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.851 kb on - strand, within IAI46_25075 at 5353.907 kb on - strand, within IAI46_25075 at 5353.996 kb on + strand, within IAI46_25075 at 5353.996 kb on + strand, within IAI46_25075 at 5353.997 kb on - strand, within IAI46_25075 at 5354.082 kb on + strand, within IAI46_25075 at 5354.082 kb on + strand, within IAI46_25075 at 5354.083 kb on - strand, within IAI46_25075 at 5354.086 kb on + strand, within IAI46_25075 at 5354.086 kb on + strand, within IAI46_25075 at 5354.086 kb on + strand, within IAI46_25075 at 5354.086 kb on + strand, within IAI46_25075 at 5354.087 kb on - strand, within IAI46_25075 at 5354.087 kb on - strand, within IAI46_25075 at 5354.087 kb on - strand, within IAI46_25075 at 5354.221 kb on + strand at 5354.221 kb on + strand at 5354.221 kb on + strand at 5354.221 kb on + strand at 5354.221 kb on + strand at 5354.221 kb on + strand at 5354.292 kb on + strand at 5354.293 kb on - strand at 5354.293 kb on - strand at 5354.293 kb on - strand at 5354.293 kb on - strand at 5354.298 kb on - strand at 5354.301 kb on + strand at 5354.301 kb on + strand at 5354.348 kb on + strand at 5354.349 kb on - strand at 5354.349 kb on - strand at 5354.356 kb on + strand at 5354.356 kb on + strand at 5354.356 kb on + strand at 5354.357 kb on - strand at 5354.357 kb on - strand at 5354.357 kb on - strand at 5354.405 kb on - strand at 5354.405 kb on - strand at 5354.415 kb on + strand at 5354.459 kb on + strand at 5354.459 kb on + strand at 5354.460 kb on - strand at 5354.493 kb on + strand at 5354.551 kb on - strand at 5354.551 kb on - strand at 5354.576 kb on + strand at 5354.576 kb on + strand at 5354.616 kb on + strand at 5354.616 kb on + strand at 5354.616 kb on + strand at 5354.708 kb on + strand, within IAI46_25080 at 5354.708 kb on + strand, within IAI46_25080 at 5354.708 kb on + strand, within IAI46_25080 at 5354.708 kb on + strand, within IAI46_25080 at 5354.708 kb on + strand, within IAI46_25080 at 5354.709 kb on - strand, within IAI46_25080 at 5354.709 kb on - strand, within IAI46_25080 at 5354.709 kb on - strand, within IAI46_25080 at 5354.709 kb on - strand, within IAI46_25080
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 5,351,243 + +0.4 5,351,243 + -1.0 5,351,243 + -0.1 5,351,244 - +0.1 5,351,254 + -0.6 5,351,255 - +0.4 5,351,293 - +0.3 5,351,323 + -0.2 5,351,324 - -0.7 5,351,324 - +0.0 5,351,324 - -0.5 5,351,340 + -0.1 5,351,391 - IAI46_25065 0.14 +0.3 5,351,551 + IAI46_25065 0.31 -0.2 5,351,552 - IAI46_25065 0.31 -0.5 5,351,552 - IAI46_25065 0.31 +0.7 5,351,623 + IAI46_25065 0.38 -1.4 5,351,623 + IAI46_25065 0.38 -1.1 5,351,624 - IAI46_25065 0.38 +0.4 5,351,627 + IAI46_25065 0.39 +0.2 5,351,627 + IAI46_25065 0.39 -0.8 5,351,627 + IAI46_25065 0.39 +1.3 5,351,627 + IAI46_25065 0.39 +0.6 5,351,628 - IAI46_25065 0.39 +0.1 5,351,628 - IAI46_25065 0.39 -0.6 5,351,628 - IAI46_25065 0.39 -0.5 5,351,630 - IAI46_25065 0.39 -0.1 5,351,646 - IAI46_25065 0.41 +0.6 5,351,659 + IAI46_25065 0.42 +0.6 5,351,659 + IAI46_25065 0.42 +0.7 5,351,659 + IAI46_25065 0.42 +0.3 5,351,660 - IAI46_25065 0.42 +0.6 5,351,660 - IAI46_25065 0.42 -1.0 5,351,660 - IAI46_25065 0.42 -1.3 5,351,672 + IAI46_25065 0.43 +0.2 5,351,697 - IAI46_25065 0.46 +0.3 5,351,760 - IAI46_25065 0.52 -0.0 5,351,791 + IAI46_25065 0.56 -0.1 5,351,791 + IAI46_25065 0.56 +0.9 5,351,791 + IAI46_25065 0.56 +0.9 5,351,792 - IAI46_25065 0.56 +0.9 5,351,792 - IAI46_25065 0.56 +0.3 5,351,880 - IAI46_25065 0.65 -1.2 5,352,048 - IAI46_25065 0.82 -0.3 5,352,077 + IAI46_25065 0.85 +0.5 5,352,078 - IAI46_25065 0.85 -0.7 5,352,078 - IAI46_25065 0.85 +1.0 5,352,089 + IAI46_25065 0.87 +0.3 5,352,090 - IAI46_25065 0.87 +0.2 5,352,093 + IAI46_25065 0.87 -3.1 5,352,093 + IAI46_25065 0.87 -1.7 5,352,093 + IAI46_25065 0.87 -1.4 5,352,094 - IAI46_25065 0.87 +0.2 5,352,094 - IAI46_25065 0.87 -1.0 5,352,169 - -0.0 5,352,182 + -0.0 5,352,183 - -0.8 5,352,218 + +0.3 5,352,219 - -0.5 5,352,226 + +1.2 5,352,226 + -1.8 5,352,237 + +0.4 5,352,245 - +0.8 5,352,245 - +0.4 5,352,417 - IAI46_25070 0.13 -1.8 5,352,420 + IAI46_25070 0.13 -0.4 5,352,420 + IAI46_25070 0.13 +0.1 5,352,420 + IAI46_25070 0.13 +0.0 5,352,421 - IAI46_25070 0.13 +0.2 5,352,428 - IAI46_25070 0.13 -0.4 5,352,428 - IAI46_25070 0.13 +0.3 5,352,738 - IAI46_25070 0.34 -0.1 5,352,739 + IAI46_25070 0.34 +0.0 5,352,739 + IAI46_25070 0.34 -1.9 5,352,739 + IAI46_25070 0.34 +0.5 5,352,740 - IAI46_25070 0.34 -0.0 5,352,740 - IAI46_25070 0.34 +0.4 5,352,740 - IAI46_25070 0.34 +0.7 5,352,740 - IAI46_25070 0.34 -0.0 5,352,740 - IAI46_25070 0.34 -1.6 5,352,740 - IAI46_25070 0.34 -0.0 5,352,740 - IAI46_25070 0.34 -0.7 5,352,740 - IAI46_25070 0.34 +0.5 5,352,740 - IAI46_25070 0.34 -0.4 5,352,740 - IAI46_25070 0.34 +1.0 5,352,740 - IAI46_25070 0.34 -0.6 5,352,911 + IAI46_25070 0.46 +1.4 5,352,911 + IAI46_25070 0.46 -1.0 5,352,911 + IAI46_25070 0.46 -0.1 5,352,911 + IAI46_25070 0.46 +0.4 5,352,912 - IAI46_25070 0.46 +0.2 5,353,030 - IAI46_25070 0.53 +0.1 5,353,074 - IAI46_25070 0.56 +0.2 5,353,144 + IAI46_25070 0.61 -0.6 5,353,144 + IAI46_25070 0.61 +0.5 5,353,144 + IAI46_25070 0.61 +0.8 5,353,144 + IAI46_25070 0.61 +0.7 5,353,144 + IAI46_25070 0.61 +0.0 5,353,144 + IAI46_25070 0.61 +0.6 5,353,145 - IAI46_25070 0.61 +0.4 5,353,145 - IAI46_25070 0.61 -1.2 5,353,145 - IAI46_25070 0.61 +0.2 5,353,188 - IAI46_25070 0.64 +0.6 5,353,191 + IAI46_25070 0.64 -0.8 5,353,239 - IAI46_25070 0.67 +0.1 5,353,375 + IAI46_25070 0.76 -0.4 5,353,375 + IAI46_25070 0.76 -0.7 5,353,375 + IAI46_25070 0.76 +0.0 5,353,375 + IAI46_25070 0.76 +0.6 5,353,376 - IAI46_25070 0.76 +1.2 5,353,376 - IAI46_25070 0.76 -0.7 5,353,376 - IAI46_25070 0.76 -1.3 5,353,403 + IAI46_25070 0.78 -0.5 5,353,449 + IAI46_25070 0.81 +0.4 5,353,450 - IAI46_25070 0.81 -0.3 5,353,450 - IAI46_25070 0.81 +0.4 5,353,546 + IAI46_25070 0.88 +0.6 5,353,547 - IAI46_25070 0.88 -0.3 5,353,569 - IAI46_25070 0.89 -0.2 5,353,570 + IAI46_25070 0.89 +0.3 5,353,697 + +0.6 5,353,720 - -0.7 5,353,720 - -0.3 5,353,730 + +0.4 5,353,730 + -0.6 5,353,730 + +0.0 5,353,730 + +0.7 5,353,730 + -1.2 5,353,730 + +0.5 5,353,730 + -0.2 5,353,730 + +0.1 5,353,730 + +0.9 5,353,730 + -0.3 5,353,730 + -0.4 5,353,730 + -2.1 5,353,730 + +0.4 5,353,730 + +0.3 5,353,730 + +1.3 5,353,730 + +0.9 5,353,730 + +0.3 5,353,731 - -0.6 5,353,731 - +0.4 5,353,731 - +0.1 5,353,731 - -0.3 5,353,731 - -0.4 5,353,731 - -0.1 5,353,731 - +0.3 5,353,731 - -0.6 5,353,748 - -0.3 5,353,748 - +0.2 5,353,775 + +0.3 5,353,775 + -0.0 5,353,831 - IAI46_25075 0.22 -0.2 5,353,849 - IAI46_25075 0.26 -0.1 5,353,850 + IAI46_25075 0.27 +0.1 5,353,851 - IAI46_25075 0.27 -1.5 5,353,851 - IAI46_25075 0.27 -0.3 5,353,851 - IAI46_25075 0.27 +1.2 5,353,851 - IAI46_25075 0.27 +0.4 5,353,851 - IAI46_25075 0.27 -0.7 5,353,851 - IAI46_25075 0.27 +0.3 5,353,851 - IAI46_25075 0.27 -2.3 5,353,851 - IAI46_25075 0.27 -0.0 5,353,851 - IAI46_25075 0.27 +2.3 5,353,851 - IAI46_25075 0.27 +0.2 5,353,851 - IAI46_25075 0.27 -0.4 5,353,907 - IAI46_25075 0.40 +2.3 5,353,996 + IAI46_25075 0.61 +0.1 5,353,996 + IAI46_25075 0.61 -0.0 5,353,997 - IAI46_25075 0.62 +0.4 5,354,082 + IAI46_25075 0.82 +2.0 5,354,082 + IAI46_25075 0.82 -0.3 5,354,083 - IAI46_25075 0.82 -1.4 5,354,086 + IAI46_25075 0.83 +1.4 5,354,086 + IAI46_25075 0.83 +0.3 5,354,086 + IAI46_25075 0.83 -0.2 5,354,086 + IAI46_25075 0.83 +0.3 5,354,087 - IAI46_25075 0.83 +0.7 5,354,087 - IAI46_25075 0.83 +0.9 5,354,087 - IAI46_25075 0.83 -0.7 5,354,221 + +1.0 5,354,221 + -0.5 5,354,221 + +0.6 5,354,221 + +0.9 5,354,221 + +0.7 5,354,221 + +0.7 5,354,292 + -0.5 5,354,293 - -0.1 5,354,293 - +0.1 5,354,293 - +0.7 5,354,293 - +0.1 5,354,298 - +0.3 5,354,301 + -1.3 5,354,301 + +0.5 5,354,348 + +0.2 5,354,349 - -0.5 5,354,349 - +0.9 5,354,356 + +0.3 5,354,356 + +0.8 5,354,356 + -0.3 5,354,357 - +0.2 5,354,357 - +0.9 5,354,357 - +0.1 5,354,405 - -0.9 5,354,405 - +0.1 5,354,415 + -0.1 5,354,459 + -0.9 5,354,459 + +0.0 5,354,460 - -0.1 5,354,493 + -1.5 5,354,551 - -0.1 5,354,551 - +2.5 5,354,576 + -0.1 5,354,576 + -2.3 5,354,616 + -0.3 5,354,616 + +1.5 5,354,616 + -0.4 5,354,708 + IAI46_25080 0.13 +0.1 5,354,708 + IAI46_25080 0.13 +1.2 5,354,708 + IAI46_25080 0.13 -0.2 5,354,708 + IAI46_25080 0.13 +1.0 5,354,708 + IAI46_25080 0.13 +1.2 5,354,709 - IAI46_25080 0.13 +1.0 5,354,709 - IAI46_25080 0.13 -0.3 5,354,709 - IAI46_25080 0.13 +0.3 5,354,709 - IAI46_25080 0.13 +0.1
Or see this region's nucleotide sequence