Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24775 and IAI46_24780 overlap by 4 nucleotides IAI46_24780 and IAI46_24785 are separated by 2 nucleotides
IAI46_24775: IAI46_24775 - putative lipopolysaccharide heptosyltransferase III, at 5,288,328 to 5,289,410
_24775
IAI46_24780: IAI46_24780 - glycosyltransferase family 4 protein, at 5,289,407 to 5,290,534
_24780
IAI46_24785: IAI46_24785 - glycosyltransferase, at 5,290,537 to 5,291,634
_24785
Position (kb) 5289
5290
5291 Strain fitness (log2 ratio) -1
0
1
2 at 5288.435 kb on + strand at 5288.435 kb on + strand at 5288.474 kb on - strand, within IAI46_24775 at 5288.474 kb on - strand, within IAI46_24775 at 5288.483 kb on + strand, within IAI46_24775 at 5288.609 kb on + strand, within IAI46_24775 at 5288.609 kb on + strand, within IAI46_24775 at 5288.609 kb on + strand, within IAI46_24775 at 5288.609 kb on + strand, within IAI46_24775 at 5288.609 kb on + strand, within IAI46_24775 at 5288.690 kb on + strand, within IAI46_24775 at 5288.691 kb on - strand, within IAI46_24775 at 5288.731 kb on + strand, within IAI46_24775 at 5288.859 kb on + strand, within IAI46_24775 at 5288.922 kb on + strand, within IAI46_24775 at 5289.100 kb on + strand, within IAI46_24775 at 5289.100 kb on + strand, within IAI46_24775 at 5289.100 kb on + strand, within IAI46_24775 at 5289.175 kb on + strand, within IAI46_24775 at 5289.175 kb on + strand, within IAI46_24775 at 5289.176 kb on - strand, within IAI46_24775 at 5289.176 kb on - strand, within IAI46_24775 at 5289.189 kb on - strand, within IAI46_24775 at 5289.189 kb on - strand, within IAI46_24775 at 5289.286 kb on + strand, within IAI46_24775 at 5289.351 kb on + strand at 5289.351 kb on + strand at 5289.351 kb on + strand at 5289.362 kb on + strand at 5289.362 kb on + strand at 5290.532 kb on + strand at 5290.532 kb on + strand at 5290.533 kb on - strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.536 kb on + strand at 5290.537 kb on - strand at 5290.537 kb on - strand at 5290.537 kb on - strand at 5290.537 kb on - strand at 5290.662 kb on + strand, within IAI46_24785 at 5290.662 kb on + strand, within IAI46_24785 at 5290.662 kb on + strand, within IAI46_24785 at 5290.916 kb on - strand, within IAI46_24785 at 5290.916 kb on - strand, within IAI46_24785 at 5291.025 kb on - strand, within IAI46_24785 at 5291.137 kb on + strand, within IAI46_24785 at 5291.214 kb on - strand, within IAI46_24785
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 5,288,435 + -0.4 5,288,435 + +1.0 5,288,474 - IAI46_24775 0.13 +0.7 5,288,474 - IAI46_24775 0.13 -0.3 5,288,483 + IAI46_24775 0.14 -0.0 5,288,609 + IAI46_24775 0.26 -1.0 5,288,609 + IAI46_24775 0.26 +0.2 5,288,609 + IAI46_24775 0.26 -0.3 5,288,609 + IAI46_24775 0.26 +0.5 5,288,609 + IAI46_24775 0.26 +0.2 5,288,690 + IAI46_24775 0.33 +0.6 5,288,691 - IAI46_24775 0.34 +1.4 5,288,731 + IAI46_24775 0.37 -0.1 5,288,859 + IAI46_24775 0.49 -0.2 5,288,922 + IAI46_24775 0.55 +0.1 5,289,100 + IAI46_24775 0.71 +0.2 5,289,100 + IAI46_24775 0.71 +1.4 5,289,100 + IAI46_24775 0.71 -0.7 5,289,175 + IAI46_24775 0.78 -0.7 5,289,175 + IAI46_24775 0.78 +0.4 5,289,176 - IAI46_24775 0.78 +0.5 5,289,176 - IAI46_24775 0.78 +0.4 5,289,189 - IAI46_24775 0.80 +0.7 5,289,189 - IAI46_24775 0.80 -0.3 5,289,286 + IAI46_24775 0.88 -1.2 5,289,351 + +0.1 5,289,351 + +1.0 5,289,351 + -0.8 5,289,362 + +0.4 5,289,362 + -0.3 5,290,532 + +0.3 5,290,532 + -0.5 5,290,533 - -0.6 5,290,536 + -0.5 5,290,536 + -0.5 5,290,536 + -0.2 5,290,536 + -0.2 5,290,536 + -0.3 5,290,536 + -0.4 5,290,536 + -0.1 5,290,537 - +0.1 5,290,537 - +1.1 5,290,537 - -0.2 5,290,537 - +2.1 5,290,662 + IAI46_24785 0.11 +0.1 5,290,662 + IAI46_24785 0.11 +0.7 5,290,662 + IAI46_24785 0.11 +0.4 5,290,916 - IAI46_24785 0.35 +0.7 5,290,916 - IAI46_24785 0.35 +1.4 5,291,025 - IAI46_24785 0.44 -0.8 5,291,137 + IAI46_24785 0.55 +0.2 5,291,214 - IAI46_24785 0.62 -0.8
Or see this region's nucleotide sequence