Strain Fitness in Serratia liquefaciens MT49 around IAI46_24655

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24650 and IAI46_24655 are separated by 287 nucleotidesIAI46_24655 and IAI46_24660 are separated by 148 nucleotidesIAI46_24660 and IAI46_24665 overlap by 4 nucleotides IAI46_24650: IAI46_24650 - CDF family cation-efflux transporter FieF, at 5,263,711 to 5,264,613 _24650 IAI46_24655: IAI46_24655 - cell-envelope stress modulator CpxP, at 5,264,901 to 5,265,395 _24655 IAI46_24660: IAI46_24660 - envelope stress response regulator transcription factor CpxR, at 5,265,544 to 5,266,242 _24660 IAI46_24665: IAI46_24665 - envelope stress sensor histidine kinase CpxA, at 5,266,239 to 5,267,612 _24665 Position (kb) 5264 5265 5266Strain fitness (log2 ratio) -2 -1 0 1at 5264.037 kb on + strand, within IAI46_24650at 5264.037 kb on + strand, within IAI46_24650at 5264.037 kb on + strand, within IAI46_24650at 5264.048 kb on + strand, within IAI46_24650at 5264.048 kb on + strand, within IAI46_24650at 5264.049 kb on - strand, within IAI46_24650at 5264.049 kb on - strand, within IAI46_24650at 5264.056 kb on + strand, within IAI46_24650at 5264.057 kb on - strand, within IAI46_24650at 5264.116 kb on + strand, within IAI46_24650at 5264.117 kb on - strand, within IAI46_24650at 5264.117 kb on - strand, within IAI46_24650at 5264.118 kb on + strand, within IAI46_24650at 5264.119 kb on - strand, within IAI46_24650at 5264.124 kb on + strand, within IAI46_24650at 5264.124 kb on + strand, within IAI46_24650at 5264.125 kb on - strand, within IAI46_24650at 5264.154 kb on - strand, within IAI46_24650at 5264.163 kb on + strand, within IAI46_24650at 5264.163 kb on + strand, within IAI46_24650at 5264.164 kb on - strand, within IAI46_24650at 5264.164 kb on - strand, within IAI46_24650at 5264.197 kb on + strand, within IAI46_24650at 5264.213 kb on + strand, within IAI46_24650at 5264.213 kb on + strand, within IAI46_24650at 5264.213 kb on + strand, within IAI46_24650at 5264.213 kb on + strand, within IAI46_24650at 5264.214 kb on - strand, within IAI46_24650at 5264.214 kb on - strand, within IAI46_24650at 5264.297 kb on + strand, within IAI46_24650at 5264.297 kb on + strand, within IAI46_24650at 5264.298 kb on - strand, within IAI46_24650at 5264.298 kb on - strand, within IAI46_24650at 5264.298 kb on - strand, within IAI46_24650at 5264.298 kb on - strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.352 kb on + strand, within IAI46_24650at 5264.353 kb on - strand, within IAI46_24650at 5264.353 kb on - strand, within IAI46_24650at 5264.353 kb on - strand, within IAI46_24650at 5264.429 kb on + strand, within IAI46_24650at 5264.429 kb on + strand, within IAI46_24650at 5264.434 kb on + strand, within IAI46_24650at 5264.434 kb on + strand, within IAI46_24650at 5264.434 kb on + strand, within IAI46_24650at 5264.434 kb on + strand, within IAI46_24650at 5264.435 kb on - strand, within IAI46_24650at 5264.466 kb on + strand, within IAI46_24650at 5264.466 kb on + strand, within IAI46_24650at 5264.542 kb on + strandat 5264.543 kb on - strandat 5264.601 kb on - strandat 5264.646 kb on + strandat 5264.646 kb on + strandat 5264.647 kb on - strandat 5264.649 kb on - strandat 5264.680 kb on + strandat 5264.681 kb on - strandat 5264.696 kb on - strandat 5264.773 kb on + strandat 5264.774 kb on - strandat 5264.774 kb on - strandat 5264.821 kb on + strandat 5264.878 kb on + strandat 5264.879 kb on - strandat 5264.912 kb on + strandat 5264.913 kb on - strandat 5264.916 kb on + strandat 5264.917 kb on - strandat 5265.028 kb on + strand, within IAI46_24655at 5265.028 kb on + strand, within IAI46_24655at 5265.103 kb on + strand, within IAI46_24655at 5265.104 kb on - strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.143 kb on + strand, within IAI46_24655at 5265.144 kb on - strand, within IAI46_24655at 5265.144 kb on - strand, within IAI46_24655at 5265.165 kb on + strand, within IAI46_24655at 5265.166 kb on - strand, within IAI46_24655at 5265.204 kb on + strand, within IAI46_24655at 5265.205 kb on - strand, within IAI46_24655at 5265.320 kb on + strand, within IAI46_24655at 5265.321 kb on - strand, within IAI46_24655at 5265.321 kb on - strand, within IAI46_24655at 5265.345 kb on - strand, within IAI46_24655at 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.371 kb on + strandat 5265.372 kb on - strandat 5265.375 kb on + strandat 5265.375 kb on + strandat 5265.375 kb on + strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.390 kb on - strandat 5265.443 kb on + strandat 5265.444 kb on - strandat 5265.444 kb on - strandat 5265.478 kb on - strandat 5265.478 kb on - strandat 5265.487 kb on + strandat 5265.519 kb on - strandat 5265.535 kb on + strandat 5265.542 kb on + strandat 5265.543 kb on - strandat 5265.543 kb on - strandat 5265.727 kb on - strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.874 kb on - strand, within IAI46_24660at 5265.928 kb on - strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.951 kb on - strand, within IAI46_24660at 5266.030 kb on - strand, within IAI46_24660at 5266.039 kb on + strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.058 kb on + strand, within IAI46_24660at 5266.097 kb on + strand, within IAI46_24660at 5266.098 kb on - strand, within IAI46_24660at 5266.098 kb on - strand, within IAI46_24660at 5266.137 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.162 kb on - strand, within IAI46_24660at 5266.220 kb on - strandat 5266.223 kb on + strandat 5266.223 kb on + strandat 5266.223 kb on + strandat 5266.224 kb on - strandat 5266.224 kb on - strandat 5266.224 kb on - strandat 5266.229 kb on + strandat 5266.229 kb on + strandat 5266.229 kb on + strandat 5266.288 kb on + strandat 5266.288 kb on + strandat 5266.289 kb on - strandat 5266.289 kb on - strandat 5266.289 kb on - strandat 5266.327 kb on + strandat 5266.328 kb on - strandat 5266.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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5,264,037 + IAI46_24650 0.36 +0.0
5,264,037 + IAI46_24650 0.36 -1.5
5,264,037 + IAI46_24650 0.36 +0.6
5,264,048 + IAI46_24650 0.37 -0.5
5,264,048 + IAI46_24650 0.37 -1.4
5,264,049 - IAI46_24650 0.37 +0.2
5,264,049 - IAI46_24650 0.37 -0.3
5,264,056 + IAI46_24650 0.38 -0.5
5,264,057 - IAI46_24650 0.38 +0.3
5,264,116 + IAI46_24650 0.45 -0.5
5,264,117 - IAI46_24650 0.45 -0.0
5,264,117 - IAI46_24650 0.45 -0.7
5,264,118 + IAI46_24650 0.45 +1.7
5,264,119 - IAI46_24650 0.45 +0.5
5,264,124 + IAI46_24650 0.46 +0.7
5,264,124 + IAI46_24650 0.46 -0.6
5,264,125 - IAI46_24650 0.46 +0.4
5,264,154 - IAI46_24650 0.49 -0.3
5,264,163 + IAI46_24650 0.50 +0.3
5,264,163 + IAI46_24650 0.50 +0.5
5,264,164 - IAI46_24650 0.50 +0.6
5,264,164 - IAI46_24650 0.50 +0.2
5,264,197 + IAI46_24650 0.54 -0.1
5,264,213 + IAI46_24650 0.56 -0.3
5,264,213 + IAI46_24650 0.56 +0.5
5,264,213 + IAI46_24650 0.56 +0.6
5,264,213 + IAI46_24650 0.56 +0.5
5,264,214 - IAI46_24650 0.56 +1.6
5,264,214 - IAI46_24650 0.56 -0.2
5,264,297 + IAI46_24650 0.65 +0.3
5,264,297 + IAI46_24650 0.65 +0.4
5,264,298 - IAI46_24650 0.65 +0.2
5,264,298 - IAI46_24650 0.65 +0.2
5,264,298 - IAI46_24650 0.65 -0.2
5,264,298 - IAI46_24650 0.65 +0.4
5,264,352 + IAI46_24650 0.71 +0.5
5,264,352 + IAI46_24650 0.71 -0.0
5,264,352 + IAI46_24650 0.71 -0.9
5,264,352 + IAI46_24650 0.71 -0.1
5,264,352 + IAI46_24650 0.71 +0.2
5,264,352 + IAI46_24650 0.71 -1.0
5,264,352 + IAI46_24650 0.71 +0.8
5,264,352 + IAI46_24650 0.71 -0.6
5,264,353 - IAI46_24650 0.71 +1.0
5,264,353 - IAI46_24650 0.71 +1.1
5,264,353 - IAI46_24650 0.71 +0.8
5,264,429 + IAI46_24650 0.80 +0.2
5,264,429 + IAI46_24650 0.80 +0.0
5,264,434 + IAI46_24650 0.80 -1.2
5,264,434 + IAI46_24650 0.80 +0.1
5,264,434 + IAI46_24650 0.80 +0.3
5,264,434 + IAI46_24650 0.80 -0.6
5,264,435 - IAI46_24650 0.80 -0.0
5,264,466 + IAI46_24650 0.84 -0.1
5,264,466 + IAI46_24650 0.84 +0.9
5,264,542 + +0.0
5,264,543 - +0.7
5,264,601 - -0.4
5,264,646 + -0.8
5,264,646 + +1.6
5,264,647 - -1.2
5,264,649 - +0.4
5,264,680 + +0.2
5,264,681 - +0.2
5,264,696 - +0.5
5,264,773 + +0.5
5,264,774 - -0.7
5,264,774 - -0.3
5,264,821 + -0.0
5,264,878 + -0.4
5,264,879 - +0.7
5,264,912 + -1.4
5,264,913 - -0.8
5,264,916 + +1.2
5,264,917 - -0.4
5,265,028 + IAI46_24655 0.26 -0.6
5,265,028 + IAI46_24655 0.26 +1.5
5,265,103 + IAI46_24655 0.41 +0.3
5,265,104 - IAI46_24655 0.41 +0.3
5,265,143 + IAI46_24655 0.49 +0.0
5,265,143 + IAI46_24655 0.49 +1.3
5,265,143 + IAI46_24655 0.49 +1.1
5,265,143 + IAI46_24655 0.49 +0.4
5,265,143 + IAI46_24655 0.49 +0.5
5,265,143 + IAI46_24655 0.49 +0.8
5,265,143 + IAI46_24655 0.49 -0.9
5,265,143 + IAI46_24655 0.49 +0.0
5,265,144 - IAI46_24655 0.49 +0.0
5,265,144 - IAI46_24655 0.49 -0.3
5,265,165 + IAI46_24655 0.53 -0.5
5,265,166 - IAI46_24655 0.54 -0.1
5,265,204 + IAI46_24655 0.61 +0.5
5,265,205 - IAI46_24655 0.61 +0.1
5,265,320 + IAI46_24655 0.85 -0.1
5,265,321 - IAI46_24655 0.85 -0.5
5,265,321 - IAI46_24655 0.85 -0.2
5,265,345 - IAI46_24655 0.90 +0.1
5,265,352 - -0.7
5,265,352 - +0.9
5,265,352 - +0.7
5,265,352 - +0.7
5,265,352 - +0.1
5,265,371 + -0.4
5,265,372 - -0.3
5,265,375 + +0.5
5,265,375 + +0.5
5,265,375 + -0.2
5,265,376 - -0.5
5,265,376 - +0.1
5,265,376 - -0.5
5,265,376 - -0.3
5,265,390 - -0.5
5,265,443 + +0.1
5,265,444 - -0.1
5,265,444 - +0.7
5,265,478 - +0.5
5,265,478 - -0.7
5,265,487 + -0.4
5,265,519 - +1.5
5,265,535 + -0.7
5,265,542 + -0.3
5,265,543 - -1.2
5,265,543 - -1.1
5,265,727 - IAI46_24660 0.26 +0.3
5,265,832 + IAI46_24660 0.41 +1.3
5,265,832 + IAI46_24660 0.41 -0.6
5,265,832 + IAI46_24660 0.41 -0.7
5,265,832 + IAI46_24660 0.41 +1.0
5,265,874 - IAI46_24660 0.47 -0.1
5,265,928 - IAI46_24660 0.55 -0.0
5,265,950 + IAI46_24660 0.58 +0.5
5,265,950 + IAI46_24660 0.58 +1.0
5,265,950 + IAI46_24660 0.58 -0.7
5,265,951 - IAI46_24660 0.58 +0.8
5,266,030 - IAI46_24660 0.70 +0.2
5,266,039 + IAI46_24660 0.71 +0.3
5,266,040 - IAI46_24660 0.71 +0.1
5,266,040 - IAI46_24660 0.71 +0.5
5,266,040 - IAI46_24660 0.71 -0.1
5,266,058 + IAI46_24660 0.74 +0.5
5,266,097 + IAI46_24660 0.79 -1.6
5,266,098 - IAI46_24660 0.79 -0.5
5,266,098 - IAI46_24660 0.79 +1.4
5,266,137 + IAI46_24660 0.85 +0.7
5,266,161 + IAI46_24660 0.88 +1.1
5,266,161 + IAI46_24660 0.88 -1.8
5,266,161 + IAI46_24660 0.88 +0.1
5,266,162 - IAI46_24660 0.88 +0.6
5,266,220 - -0.7
5,266,223 + +0.9
5,266,223 + -1.4
5,266,223 + +0.1
5,266,224 - +0.1
5,266,224 - +0.4
5,266,224 - -0.9
5,266,229 + +0.5
5,266,229 + -0.7
5,266,229 + +1.2
5,266,288 + -2.2
5,266,288 + -0.2
5,266,289 - -1.0
5,266,289 - -1.5
5,266,289 - -0.6
5,266,327 + -1.8
5,266,328 - -0.2
5,266,328 - +0.5

Or see this region's nucleotide sequence