Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24310 and IAI46_24315 are separated by 146 nucleotides IAI46_24315 and IAI46_24320 are separated by 165 nucleotides
IAI46_24310: IAI46_24310 - cyclic-guanylate-specific phosphodiesterase, at 5,189,959 to 5,190,744
_24310
IAI46_24315: IAI46_24315 - 4-oxalocrotonate tautomerase family protein, at 5,190,891 to 5,191,094
_24315
IAI46_24320: IAI46_24320 - sugar kinase, at 5,191,260 to 5,192,192
_24320
Position (kb) 5190
5191
5192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5189.898 kb on - strand at 5189.917 kb on + strand at 5189.918 kb on - strand at 5190.029 kb on + strand at 5190.029 kb on + strand at 5190.029 kb on + strand at 5190.029 kb on + strand at 5190.029 kb on + strand at 5190.030 kb on - strand at 5190.030 kb on - strand at 5190.033 kb on - strand at 5190.033 kb on - strand at 5190.130 kb on + strand, within IAI46_24310 at 5190.177 kb on + strand, within IAI46_24310 at 5190.177 kb on + strand, within IAI46_24310 at 5190.178 kb on - strand, within IAI46_24310 at 5190.178 kb on - strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.212 kb on + strand, within IAI46_24310 at 5190.213 kb on - strand, within IAI46_24310 at 5190.219 kb on - strand, within IAI46_24310 at 5190.356 kb on + strand, within IAI46_24310 at 5190.357 kb on - strand, within IAI46_24310 at 5190.357 kb on - strand, within IAI46_24310 at 5190.427 kb on - strand, within IAI46_24310 at 5190.540 kb on - strand, within IAI46_24310 at 5190.646 kb on - strand, within IAI46_24310 at 5190.647 kb on + strand, within IAI46_24310 at 5190.647 kb on + strand, within IAI46_24310 at 5190.648 kb on - strand, within IAI46_24310 at 5190.685 kb on + strand at 5190.685 kb on + strand at 5190.685 kb on + strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.688 kb on - strand at 5190.688 kb on - strand at 5190.752 kb on - strand at 5190.832 kb on - strand at 5190.832 kb on - strand at 5190.852 kb on + strand at 5190.852 kb on + strand at 5190.862 kb on - strand at 5190.862 kb on - strand at 5190.897 kb on + strand at 5190.901 kb on + strand at 5190.902 kb on - strand at 5190.902 kb on - strand at 5191.030 kb on + strand, within IAI46_24315 at 5191.031 kb on - strand, within IAI46_24315 at 5191.031 kb on - strand, within IAI46_24315 at 5191.092 kb on + strand at 5191.092 kb on + strand at 5191.093 kb on - strand at 5191.259 kb on + strand at 5191.259 kb on + strand at 5191.329 kb on - strand at 5191.354 kb on + strand, within IAI46_24320 at 5191.354 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.366 kb on + strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.411 kb on - strand, within IAI46_24320 at 5191.482 kb on - strand, within IAI46_24320 at 5191.482 kb on - strand, within IAI46_24320 at 5191.524 kb on + strand, within IAI46_24320 at 5191.524 kb on + strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.564 kb on - strand, within IAI46_24320 at 5191.566 kb on + strand, within IAI46_24320 at 5191.650 kb on + strand, within IAI46_24320 at 5191.650 kb on + strand, within IAI46_24320 at 5191.651 kb on - strand, within IAI46_24320 at 5191.654 kb on + strand, within IAI46_24320 at 5191.654 kb on + strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.656 kb on + strand, within IAI46_24320 at 5191.657 kb on - strand, within IAI46_24320 at 5191.661 kb on + strand, within IAI46_24320 at 5191.662 kb on - strand, within IAI46_24320 at 5191.717 kb on + strand, within IAI46_24320 at 5191.718 kb on - strand, within IAI46_24320 at 5191.767 kb on + strand, within IAI46_24320 at 5191.928 kb on - strand, within IAI46_24320 at 5192.036 kb on + strand, within IAI46_24320 at 5192.070 kb on + strand, within IAI46_24320 at 5192.081 kb on - strand, within IAI46_24320
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 5,189,898 - +0.3 5,189,917 + +0.7 5,189,918 - +0.4 5,190,029 + -0.5 5,190,029 + -0.8 5,190,029 + +0.1 5,190,029 + -0.1 5,190,029 + +0.1 5,190,030 - +0.1 5,190,030 - -2.0 5,190,033 - +0.2 5,190,033 - -0.1 5,190,130 + IAI46_24310 0.22 -0.0 5,190,177 + IAI46_24310 0.28 -0.0 5,190,177 + IAI46_24310 0.28 +0.5 5,190,178 - IAI46_24310 0.28 -0.6 5,190,178 - IAI46_24310 0.28 +0.4 5,190,212 + IAI46_24310 0.32 +0.2 5,190,212 + IAI46_24310 0.32 +0.5 5,190,212 + IAI46_24310 0.32 -0.1 5,190,212 + IAI46_24310 0.32 -0.2 5,190,212 + IAI46_24310 0.32 +0.2 5,190,212 + IAI46_24310 0.32 -0.4 5,190,213 - IAI46_24310 0.32 -0.7 5,190,219 - IAI46_24310 0.33 +0.5 5,190,356 + IAI46_24310 0.51 +0.1 5,190,357 - IAI46_24310 0.51 +0.9 5,190,357 - IAI46_24310 0.51 +0.2 5,190,427 - IAI46_24310 0.60 +0.2 5,190,540 - IAI46_24310 0.74 +0.5 5,190,646 - IAI46_24310 0.87 +0.9 5,190,647 + IAI46_24310 0.88 +0.2 5,190,647 + IAI46_24310 0.88 +1.0 5,190,648 - IAI46_24310 0.88 +0.5 5,190,685 + +0.2 5,190,685 + +0.7 5,190,685 + +1.4 5,190,686 - +0.6 5,190,686 - +0.4 5,190,686 - +0.9 5,190,686 - +1.4 5,190,686 - -0.2 5,190,686 - -0.8 5,190,686 - +0.5 5,190,686 - +0.3 5,190,686 - +0.7 5,190,687 + +1.7 5,190,687 + +0.3 5,190,687 + -0.3 5,190,687 + +0.3 5,190,688 - +0.2 5,190,688 - -0.2 5,190,752 - +0.6 5,190,832 - +0.5 5,190,832 - -0.2 5,190,852 + +0.7 5,190,852 + -0.1 5,190,862 - -1.0 5,190,862 - -0.7 5,190,897 + +0.4 5,190,901 + -0.4 5,190,902 - +0.1 5,190,902 - +1.3 5,191,030 + IAI46_24315 0.68 -0.1 5,191,031 - IAI46_24315 0.69 +0.9 5,191,031 - IAI46_24315 0.69 +2.7 5,191,092 + +0.3 5,191,092 + +0.7 5,191,093 - +1.7 5,191,259 + -0.7 5,191,259 + +0.5 5,191,329 - +0.7 5,191,354 + IAI46_24320 0.10 +0.7 5,191,354 + IAI46_24320 0.10 +0.3 5,191,358 + IAI46_24320 0.11 +0.4 5,191,358 + IAI46_24320 0.11 +0.6 5,191,358 + IAI46_24320 0.11 +0.3 5,191,359 - IAI46_24320 0.11 -0.1 5,191,359 - IAI46_24320 0.11 -0.1 5,191,359 - IAI46_24320 0.11 +1.5 5,191,366 + IAI46_24320 0.11 -0.2 5,191,367 - IAI46_24320 0.11 -0.2 5,191,367 - IAI46_24320 0.11 +0.7 5,191,367 - IAI46_24320 0.11 -0.4 5,191,368 + IAI46_24320 0.12 +0.2 5,191,368 + IAI46_24320 0.12 +0.3 5,191,368 + IAI46_24320 0.12 -0.3 5,191,368 + IAI46_24320 0.12 -0.7 5,191,368 + IAI46_24320 0.12 -0.1 5,191,368 + IAI46_24320 0.12 +0.1 5,191,369 - IAI46_24320 0.12 -0.8 5,191,369 - IAI46_24320 0.12 -0.4 5,191,369 - IAI46_24320 0.12 +0.0 5,191,369 - IAI46_24320 0.12 +0.3 5,191,369 - IAI46_24320 0.12 -0.1 5,191,369 - IAI46_24320 0.12 +1.0 5,191,369 - IAI46_24320 0.12 +0.3 5,191,410 + IAI46_24320 0.16 -0.3 5,191,410 + IAI46_24320 0.16 +0.8 5,191,410 + IAI46_24320 0.16 +0.1 5,191,410 + IAI46_24320 0.16 +0.1 5,191,411 - IAI46_24320 0.16 +0.5 5,191,482 - IAI46_24320 0.24 +0.5 5,191,482 - IAI46_24320 0.24 +0.1 5,191,524 + IAI46_24320 0.28 -0.9 5,191,524 + IAI46_24320 0.28 +0.8 5,191,525 - IAI46_24320 0.28 -0.8 5,191,525 - IAI46_24320 0.28 +0.5 5,191,525 - IAI46_24320 0.28 +0.8 5,191,525 - IAI46_24320 0.28 +1.6 5,191,564 - IAI46_24320 0.33 +0.9 5,191,566 + IAI46_24320 0.33 -0.0 5,191,650 + IAI46_24320 0.42 -0.0 5,191,650 + IAI46_24320 0.42 -0.1 5,191,651 - IAI46_24320 0.42 +0.2 5,191,654 + IAI46_24320 0.42 +0.5 5,191,654 + IAI46_24320 0.42 +1.8 5,191,655 - IAI46_24320 0.42 -0.7 5,191,655 - IAI46_24320 0.42 +1.0 5,191,655 - IAI46_24320 0.42 +1.0 5,191,655 - IAI46_24320 0.42 -0.3 5,191,655 - IAI46_24320 0.42 -1.1 5,191,656 + IAI46_24320 0.42 -0.6 5,191,657 - IAI46_24320 0.43 -0.2 5,191,661 + IAI46_24320 0.43 -0.4 5,191,662 - IAI46_24320 0.43 +0.5 5,191,717 + IAI46_24320 0.49 -0.1 5,191,718 - IAI46_24320 0.49 +0.1 5,191,767 + IAI46_24320 0.54 -0.3 5,191,928 - IAI46_24320 0.72 +0.4 5,192,036 + IAI46_24320 0.83 +0.6 5,192,070 + IAI46_24320 0.87 -0.5 5,192,081 - IAI46_24320 0.88 +0.1
Or see this region's nucleotide sequence