Strain Fitness in Serratia liquefaciens MT49 around IAI46_21520

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21515 and IAI46_21520 are separated by 1 nucleotidesIAI46_21520 and IAI46_21525 overlap by 14 nucleotides IAI46_21515: IAI46_21515 - TolC family outer membrane protein, at 4,559,253 to 4,560,620 _21515 IAI46_21520: IAI46_21520 - HlyD family type I secretion periplasmic adaptor subunit, at 4,560,622 to 4,561,941 _21520 IAI46_21525: IAI46_21525 - type I secretion system permease/ATPase, at 4,561,928 to 4,563,673 _21525 Position (kb) 4560 4561 4562Strain fitness (log2 ratio) -2 -1 0 1 2at 4559.639 kb on - strand, within IAI46_21515at 4559.658 kb on + strand, within IAI46_21515at 4559.658 kb on + strand, within IAI46_21515at 4559.680 kb on + strand, within IAI46_21515at 4559.680 kb on + strand, within IAI46_21515at 4559.734 kb on + strand, within IAI46_21515at 4559.735 kb on - strand, within IAI46_21515at 4559.735 kb on - strand, within IAI46_21515at 4559.742 kb on + strand, within IAI46_21515at 4559.743 kb on - strand, within IAI46_21515at 4559.743 kb on - strand, within IAI46_21515at 4559.775 kb on + strand, within IAI46_21515at 4559.775 kb on + strand, within IAI46_21515at 4559.776 kb on - strand, within IAI46_21515at 4559.814 kb on - strand, within IAI46_21515at 4559.814 kb on - strand, within IAI46_21515at 4559.869 kb on + strand, within IAI46_21515at 4559.869 kb on + strand, within IAI46_21515at 4559.948 kb on + strand, within IAI46_21515at 4559.949 kb on - strand, within IAI46_21515at 4560.100 kb on + strand, within IAI46_21515at 4560.105 kb on - strand, within IAI46_21515at 4560.105 kb on - strand, within IAI46_21515at 4560.160 kb on + strand, within IAI46_21515at 4560.161 kb on - strand, within IAI46_21515at 4560.161 kb on - strand, within IAI46_21515at 4560.161 kb on - strand, within IAI46_21515at 4560.161 kb on - strand, within IAI46_21515at 4560.247 kb on + strand, within IAI46_21515at 4560.266 kb on - strand, within IAI46_21515at 4560.314 kb on - strand, within IAI46_21515at 4560.320 kb on + strand, within IAI46_21515at 4560.321 kb on - strand, within IAI46_21515at 4560.321 kb on - strand, within IAI46_21515at 4560.430 kb on - strand, within IAI46_21515at 4560.430 kb on - strand, within IAI46_21515at 4560.430 kb on - strand, within IAI46_21515at 4560.480 kb on + strand, within IAI46_21515at 4560.480 kb on + strand, within IAI46_21515at 4560.481 kb on - strand, within IAI46_21515at 4560.507 kb on - strandat 4560.507 kb on - strandat 4560.510 kb on + strandat 4560.511 kb on - strandat 4560.547 kb on + strandat 4560.582 kb on + strandat 4560.582 kb on + strandat 4560.583 kb on - strandat 4560.586 kb on - strandat 4560.608 kb on + strandat 4560.608 kb on + strandat 4560.608 kb on + strandat 4560.609 kb on - strandat 4560.624 kb on - strandat 4560.624 kb on - strandat 4560.642 kb on + strandat 4560.643 kb on - strandat 4560.674 kb on + strandat 4560.675 kb on - strandat 4560.703 kb on + strandat 4560.792 kb on - strand, within IAI46_21520at 4560.792 kb on - strand, within IAI46_21520at 4560.792 kb on - strand, within IAI46_21520at 4560.792 kb on - strand, within IAI46_21520at 4560.794 kb on + strand, within IAI46_21520at 4560.795 kb on - strand, within IAI46_21520at 4560.795 kb on - strand, within IAI46_21520at 4560.795 kb on - strand, within IAI46_21520at 4560.856 kb on + strand, within IAI46_21520at 4560.856 kb on + strand, within IAI46_21520at 4560.857 kb on - strand, within IAI46_21520at 4561.013 kb on - strand, within IAI46_21520at 4561.013 kb on - strand, within IAI46_21520at 4561.026 kb on + strand, within IAI46_21520at 4561.078 kb on - strand, within IAI46_21520at 4561.079 kb on + strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.172 kb on + strand, within IAI46_21520at 4561.277 kb on + strand, within IAI46_21520at 4561.277 kb on + strand, within IAI46_21520at 4561.278 kb on - strand, within IAI46_21520at 4561.328 kb on - strand, within IAI46_21520at 4561.341 kb on + strand, within IAI46_21520at 4561.386 kb on + strand, within IAI46_21520at 4561.489 kb on + strand, within IAI46_21520at 4561.490 kb on - strand, within IAI46_21520at 4561.509 kb on + strand, within IAI46_21520at 4561.562 kb on + strand, within IAI46_21520at 4561.562 kb on + strand, within IAI46_21520at 4561.563 kb on - strand, within IAI46_21520at 4561.611 kb on + strand, within IAI46_21520at 4561.611 kb on + strand, within IAI46_21520at 4561.612 kb on - strand, within IAI46_21520at 4561.612 kb on - strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.618 kb on - strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.629 kb on - strand, within IAI46_21520at 4561.629 kb on - strand, within IAI46_21520at 4561.791 kb on + strand, within IAI46_21520at 4561.988 kb on + strandat 4561.989 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.074 kb on + strandat 4562.074 kb on + strandat 4562.221 kb on - strand, within IAI46_21525at 4562.221 kb on - strand, within IAI46_21525at 4562.221 kb on - strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.223 kb on - strand, within IAI46_21525at 4562.288 kb on + strand, within IAI46_21525at 4562.289 kb on - strand, within IAI46_21525at 4562.298 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.331 kb on - strand, within IAI46_21525at 4562.483 kb on - strand, within IAI46_21525at 4562.579 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.625 kb on - strand, within IAI46_21525at 4562.627 kb on + strand, within IAI46_21525at 4562.628 kb on - strand, within IAI46_21525at 4562.758 kb on - strand, within IAI46_21525at 4562.867 kb on - strand, within IAI46_21525at 4562.867 kb on - strand, within IAI46_21525at 4562.904 kb on - strand, within IAI46_21525at 4562.904 kb on - strand, within IAI46_21525at 4562.927 kb on + strand, within IAI46_21525at 4562.927 kb on + strand, within IAI46_21525

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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4,559,639 - IAI46_21515 0.28 +0.6
4,559,658 + IAI46_21515 0.30 -0.5
4,559,658 + IAI46_21515 0.30 -1.3
4,559,680 + IAI46_21515 0.31 +0.6
4,559,680 + IAI46_21515 0.31 +0.0
4,559,734 + IAI46_21515 0.35 +0.4
4,559,735 - IAI46_21515 0.35 -0.2
4,559,735 - IAI46_21515 0.35 +0.4
4,559,742 + IAI46_21515 0.36 +0.6
4,559,743 - IAI46_21515 0.36 +0.1
4,559,743 - IAI46_21515 0.36 +0.8
4,559,775 + IAI46_21515 0.38 +0.4
4,559,775 + IAI46_21515 0.38 +0.4
4,559,776 - IAI46_21515 0.38 -0.2
4,559,814 - IAI46_21515 0.41 -0.8
4,559,814 - IAI46_21515 0.41 +0.7
4,559,869 + IAI46_21515 0.45 +1.1
4,559,869 + IAI46_21515 0.45 +0.3
4,559,948 + IAI46_21515 0.51 -0.1
4,559,949 - IAI46_21515 0.51 +0.4
4,560,100 + IAI46_21515 0.62 +0.1
4,560,105 - IAI46_21515 0.62 +0.4
4,560,105 - IAI46_21515 0.62 +1.3
4,560,160 + IAI46_21515 0.66 -0.1
4,560,161 - IAI46_21515 0.66 +0.7
4,560,161 - IAI46_21515 0.66 -0.1
4,560,161 - IAI46_21515 0.66 +1.1
4,560,161 - IAI46_21515 0.66 +0.2
4,560,247 + IAI46_21515 0.73 +0.5
4,560,266 - IAI46_21515 0.74 +0.2
4,560,314 - IAI46_21515 0.78 +0.2
4,560,320 + IAI46_21515 0.78 +0.1
4,560,321 - IAI46_21515 0.78 -0.4
4,560,321 - IAI46_21515 0.78 +0.0
4,560,430 - IAI46_21515 0.86 +0.2
4,560,430 - IAI46_21515 0.86 +1.6
4,560,430 - IAI46_21515 0.86 +0.3
4,560,480 + IAI46_21515 0.90 +0.4
4,560,480 + IAI46_21515 0.90 -0.7
4,560,481 - IAI46_21515 0.90 +0.2
4,560,507 - -0.5
4,560,507 - +0.2
4,560,510 + -0.3
4,560,511 - +1.2
4,560,547 + +0.4
4,560,582 + +0.5
4,560,582 + +1.0
4,560,583 - -0.5
4,560,586 - +0.4
4,560,608 + -0.5
4,560,608 + -0.3
4,560,608 + -0.4
4,560,609 - +1.0
4,560,624 - +0.6
4,560,624 - +0.1
4,560,642 + +0.2
4,560,643 - +0.4
4,560,674 + -0.2
4,560,675 - -0.8
4,560,703 + +0.5
4,560,792 - IAI46_21520 0.13 -0.4
4,560,792 - IAI46_21520 0.13 -1.9
4,560,792 - IAI46_21520 0.13 +0.1
4,560,792 - IAI46_21520 0.13 -1.1
4,560,794 + IAI46_21520 0.13 -0.5
4,560,795 - IAI46_21520 0.13 -0.3
4,560,795 - IAI46_21520 0.13 -1.0
4,560,795 - IAI46_21520 0.13 +0.6
4,560,856 + IAI46_21520 0.18 -0.5
4,560,856 + IAI46_21520 0.18 +0.3
4,560,857 - IAI46_21520 0.18 +0.4
4,561,013 - IAI46_21520 0.30 -1.3
4,561,013 - IAI46_21520 0.30 -0.7
4,561,026 + IAI46_21520 0.31 +0.5
4,561,078 - IAI46_21520 0.35 +1.2
4,561,079 + IAI46_21520 0.35 +0.2
4,561,080 - IAI46_21520 0.35 -1.1
4,561,080 - IAI46_21520 0.35 +0.6
4,561,080 - IAI46_21520 0.35 +0.5
4,561,080 - IAI46_21520 0.35 -0.6
4,561,080 - IAI46_21520 0.35 +0.1
4,561,080 - IAI46_21520 0.35 +0.1
4,561,172 + IAI46_21520 0.42 -0.9
4,561,277 + IAI46_21520 0.50 +0.2
4,561,277 + IAI46_21520 0.50 +0.2
4,561,278 - IAI46_21520 0.50 +1.1
4,561,328 - IAI46_21520 0.53 -0.2
4,561,341 + IAI46_21520 0.54 +0.1
4,561,386 + IAI46_21520 0.58 -0.1
4,561,489 + IAI46_21520 0.66 +0.3
4,561,490 - IAI46_21520 0.66 +0.3
4,561,509 + IAI46_21520 0.67 -0.7
4,561,562 + IAI46_21520 0.71 +1.0
4,561,562 + IAI46_21520 0.71 -1.2
4,561,563 - IAI46_21520 0.71 +0.2
4,561,611 + IAI46_21520 0.75 +1.2
4,561,611 + IAI46_21520 0.75 -0.2
4,561,612 - IAI46_21520 0.75 +0.0
4,561,612 - IAI46_21520 0.75 -0.1
4,561,616 + IAI46_21520 0.75 +1.4
4,561,616 + IAI46_21520 0.75 +0.5
4,561,616 + IAI46_21520 0.75 -0.4
4,561,616 + IAI46_21520 0.75 +0.0
4,561,616 + IAI46_21520 0.75 +0.1
4,561,617 - IAI46_21520 0.75 +0.7
4,561,617 - IAI46_21520 0.75 +1.2
4,561,617 - IAI46_21520 0.75 -2.5
4,561,617 - IAI46_21520 0.75 -0.1
4,561,618 - IAI46_21520 0.75 -0.2
4,561,628 + IAI46_21520 0.76 +0.6
4,561,628 + IAI46_21520 0.76 +0.1
4,561,628 + IAI46_21520 0.76 +0.2
4,561,629 - IAI46_21520 0.76 +1.1
4,561,629 - IAI46_21520 0.76 +0.3
4,561,791 + IAI46_21520 0.89 +0.2
4,561,988 + +0.2
4,561,989 - -0.5
4,562,021 - -0.6
4,562,021 - -0.1
4,562,021 - +0.1
4,562,021 - +0.4
4,562,021 - -1.3
4,562,021 - +0.7
4,562,074 + +0.2
4,562,074 + +0.3
4,562,221 - IAI46_21525 0.17 +0.3
4,562,221 - IAI46_21525 0.17 +0.7
4,562,221 - IAI46_21525 0.17 +0.9
4,562,222 + IAI46_21525 0.17 -0.3
4,562,222 + IAI46_21525 0.17 +0.9
4,562,222 + IAI46_21525 0.17 +0.6
4,562,223 - IAI46_21525 0.17 -0.8
4,562,288 + IAI46_21525 0.21 -0.0
4,562,289 - IAI46_21525 0.21 -0.3
4,562,298 + IAI46_21525 0.21 +0.5
4,562,330 + IAI46_21525 0.23 +1.2
4,562,330 + IAI46_21525 0.23 +1.5
4,562,330 + IAI46_21525 0.23 +1.0
4,562,331 - IAI46_21525 0.23 +0.5
4,562,483 - IAI46_21525 0.32 +0.2
4,562,579 + IAI46_21525 0.37 +1.3
4,562,624 + IAI46_21525 0.40 +0.4
4,562,624 + IAI46_21525 0.40 +0.9
4,562,624 + IAI46_21525 0.40 +0.5
4,562,624 + IAI46_21525 0.40 +0.4
4,562,625 - IAI46_21525 0.40 +0.3
4,562,627 + IAI46_21525 0.40 +2.2
4,562,628 - IAI46_21525 0.40 +0.1
4,562,758 - IAI46_21525 0.48 -0.1
4,562,867 - IAI46_21525 0.54 -0.4
4,562,867 - IAI46_21525 0.54 +0.0
4,562,904 - IAI46_21525 0.56 -1.6
4,562,904 - IAI46_21525 0.56 -0.1
4,562,927 + IAI46_21525 0.57 +1.2
4,562,927 + IAI46_21525 0.57 +0.9

Or see this region's nucleotide sequence