Strain Fitness in Serratia liquefaciens MT49 around IAI46_17850

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17845 and IAI46_17850 are separated by 89 nucleotidesIAI46_17850 and IAI46_17855 are separated by 177 nucleotides IAI46_17845: IAI46_17845 - aspartate-semialdehyde dehydrogenase, at 3,760,175 to 3,761,185 _17845 IAI46_17850: IAI46_17850 - 4-phosphoerythronate dehydrogenase PdxB, at 3,761,275 to 3,762,396 _17850 IAI46_17855: IAI46_17855 - helix-turn-helix transcriptional regulator, at 3,762,574 to 3,763,347 _17855 Position (kb) 3761 3762 3763Strain fitness (log2 ratio) -2 -1 0 1 2at 3760.386 kb on - strand, within IAI46_17845at 3760.464 kb on + strand, within IAI46_17845at 3760.525 kb on + strand, within IAI46_17845at 3760.814 kb on - strand, within IAI46_17845at 3760.819 kb on + strand, within IAI46_17845at 3760.922 kb on - strand, within IAI46_17845at 3761.082 kb on + strand, within IAI46_17845at 3761.082 kb on + strand, within IAI46_17845at 3761.317 kb on - strandat 3761.370 kb on - strandat 3761.370 kb on - strandat 3761.447 kb on + strand, within IAI46_17850at 3761.447 kb on + strand, within IAI46_17850at 3761.471 kb on - strand, within IAI46_17850at 3761.622 kb on + strand, within IAI46_17850at 3761.622 kb on + strand, within IAI46_17850at 3761.623 kb on - strand, within IAI46_17850at 3761.623 kb on - strand, within IAI46_17850at 3761.623 kb on - strand, within IAI46_17850at 3761.875 kb on - strand, within IAI46_17850at 3761.968 kb on + strand, within IAI46_17850at 3761.969 kb on - strand, within IAI46_17850at 3761.969 kb on - strand, within IAI46_17850at 3761.974 kb on - strand, within IAI46_17850at 3762.104 kb on + strand, within IAI46_17850at 3762.104 kb on + strand, within IAI46_17850at 3762.105 kb on - strand, within IAI46_17850at 3762.105 kb on - strand, within IAI46_17850at 3762.105 kb on - strand, within IAI46_17850at 3762.105 kb on - strand, within IAI46_17850at 3762.181 kb on + strand, within IAI46_17850at 3762.373 kb on - strandat 3762.424 kb on + strandat 3762.424 kb on + strandat 3762.425 kb on - strandat 3762.483 kb on - strandat 3762.539 kb on - strandat 3762.539 kb on - strandat 3762.548 kb on + strandat 3762.549 kb on - strandat 3762.559 kb on + strandat 3762.630 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.650 kb on + strandat 3762.685 kb on - strand, within IAI46_17855at 3762.798 kb on - strand, within IAI46_17855at 3762.829 kb on - strand, within IAI46_17855at 3762.829 kb on - strand, within IAI46_17855at 3763.118 kb on + strand, within IAI46_17855at 3763.118 kb on + strand, within IAI46_17855at 3763.119 kb on - strand, within IAI46_17855at 3763.119 kb on - strand, within IAI46_17855at 3763.216 kb on + strand, within IAI46_17855at 3763.240 kb on - strand, within IAI46_17855

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,760,386 - IAI46_17845 0.21 +1.8
3,760,464 + IAI46_17845 0.29 +1.0
3,760,525 + IAI46_17845 0.35 -0.7
3,760,814 - IAI46_17845 0.63 +1.6
3,760,819 + IAI46_17845 0.64 -0.2
3,760,922 - IAI46_17845 0.74 +0.0
3,761,082 + IAI46_17845 0.90 -0.2
3,761,082 + IAI46_17845 0.90 +1.2
3,761,317 - +0.9
3,761,370 - -2.0
3,761,370 - -0.2
3,761,447 + IAI46_17850 0.15 +0.5
3,761,447 + IAI46_17850 0.15 +0.0
3,761,471 - IAI46_17850 0.17 -0.1
3,761,622 + IAI46_17850 0.31 +0.0
3,761,622 + IAI46_17850 0.31 -0.1
3,761,623 - IAI46_17850 0.31 +0.2
3,761,623 - IAI46_17850 0.31 -1.3
3,761,623 - IAI46_17850 0.31 +1.0
3,761,875 - IAI46_17850 0.53 -0.2
3,761,968 + IAI46_17850 0.62 -1.4
3,761,969 - IAI46_17850 0.62 +0.1
3,761,969 - IAI46_17850 0.62 -0.3
3,761,974 - IAI46_17850 0.62 -0.4
3,762,104 + IAI46_17850 0.74 +0.4
3,762,104 + IAI46_17850 0.74 -0.1
3,762,105 - IAI46_17850 0.74 +1.8
3,762,105 - IAI46_17850 0.74 +0.6
3,762,105 - IAI46_17850 0.74 +0.7
3,762,105 - IAI46_17850 0.74 +0.0
3,762,181 + IAI46_17850 0.81 -0.2
3,762,373 - +1.3
3,762,424 + -0.5
3,762,424 + +0.1
3,762,425 - +0.6
3,762,483 - +0.5
3,762,539 - +0.9
3,762,539 - -0.2
3,762,548 + -1.4
3,762,549 - +0.1
3,762,559 + +0.5
3,762,630 + +0.0
3,762,648 + +2.0
3,762,648 + +0.5
3,762,648 + +0.1
3,762,648 + -0.1
3,762,648 + +0.2
3,762,649 - +2.0
3,762,649 - +1.4
3,762,649 - -0.6
3,762,649 - +0.9
3,762,649 - +1.0
3,762,649 - +0.6
3,762,649 - +0.9
3,762,649 - +0.5
3,762,650 + -0.9
3,762,685 - IAI46_17855 0.14 -0.1
3,762,798 - IAI46_17855 0.29 +0.9
3,762,829 - IAI46_17855 0.33 +0.4
3,762,829 - IAI46_17855 0.33 +0.3
3,763,118 + IAI46_17855 0.70 +0.6
3,763,118 + IAI46_17855 0.70 +0.8
3,763,119 - IAI46_17855 0.70 +0.7
3,763,119 - IAI46_17855 0.70 -0.1
3,763,216 + IAI46_17855 0.83 +0.4
3,763,240 - IAI46_17855 0.86 -0.2

Or see this region's nucleotide sequence