Strain Fitness in Serratia liquefaciens MT49 around IAI46_17830

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17825 and IAI46_17830 are separated by 207 nucleotidesIAI46_17830 and IAI46_17835 are separated by 233 nucleotidesIAI46_17835 and IAI46_17840 are separated by 75 nucleotides IAI46_17825: IAI46_17825 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 3,756,001 to 3,757,266 _17825 IAI46_17830: IAI46_17830 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,757,474 to 3,758,382 _17830 IAI46_17835: IAI46_17835 - DedA family protein, at 3,758,616 to 3,759,278 _17835 IAI46_17840: IAI46_17840 - tRNA pseudouridine(38-40) synthase TruA, at 3,759,354 to 3,760,175 _17840 Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -1 0 1 2at 3757.415 kb on - strandat 3757.467 kb on - strandat 3757.467 kb on - strandat 3758.539 kb on - strandat 3758.761 kb on + strand, within IAI46_17835at 3758.761 kb on + strand, within IAI46_17835at 3758.762 kb on - strand, within IAI46_17835at 3758.762 kb on - strand, within IAI46_17835at 3758.762 kb on - strand, within IAI46_17835at 3758.762 kb on - strand, within IAI46_17835at 3758.762 kb on - strand, within IAI46_17835at 3758.804 kb on - strand, within IAI46_17835at 3758.821 kb on + strand, within IAI46_17835at 3758.934 kb on - strand, within IAI46_17835at 3759.005 kb on + strand, within IAI46_17835at 3759.006 kb on - strand, within IAI46_17835at 3759.006 kb on - strand, within IAI46_17835at 3759.010 kb on + strand, within IAI46_17835at 3759.010 kb on + strand, within IAI46_17835at 3759.010 kb on + strand, within IAI46_17835at 3759.010 kb on + strand, within IAI46_17835at 3759.011 kb on - strand, within IAI46_17835at 3759.011 kb on - strand, within IAI46_17835at 3759.186 kb on - strand, within IAI46_17835at 3759.190 kb on + strand, within IAI46_17835at 3759.191 kb on - strand, within IAI46_17835at 3759.191 kb on - strand, within IAI46_17835at 3759.201 kb on - strand, within IAI46_17835at 3759.201 kb on - strand, within IAI46_17835at 3759.205 kb on + strand, within IAI46_17835at 3759.205 kb on + strand, within IAI46_17835at 3759.206 kb on - strand, within IAI46_17835at 3759.239 kb on + strandat 3759.278 kb on + strandat 3759.278 kb on + strandat 3759.279 kb on - strandat 3759.319 kb on + strandat 3759.319 kb on + strandat 3759.319 kb on + strandat 3759.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,757,415 - +0.2
3,757,467 - +0.1
3,757,467 - -0.3
3,758,539 - +0.8
3,758,761 + IAI46_17835 0.22 -0.9
3,758,761 + IAI46_17835 0.22 +0.8
3,758,762 - IAI46_17835 0.22 +0.7
3,758,762 - IAI46_17835 0.22 -0.3
3,758,762 - IAI46_17835 0.22 +0.9
3,758,762 - IAI46_17835 0.22 +1.8
3,758,762 - IAI46_17835 0.22 -0.3
3,758,804 - IAI46_17835 0.28 +1.1
3,758,821 + IAI46_17835 0.31 +1.0
3,758,934 - IAI46_17835 0.48 +0.3
3,759,005 + IAI46_17835 0.59 +1.0
3,759,006 - IAI46_17835 0.59 +0.7
3,759,006 - IAI46_17835 0.59 +1.4
3,759,010 + IAI46_17835 0.59 -0.2
3,759,010 + IAI46_17835 0.59 -0.0
3,759,010 + IAI46_17835 0.59 +0.8
3,759,010 + IAI46_17835 0.59 +0.8
3,759,011 - IAI46_17835 0.60 -1.4
3,759,011 - IAI46_17835 0.60 -0.8
3,759,186 - IAI46_17835 0.86 -0.1
3,759,190 + IAI46_17835 0.87 +1.3
3,759,191 - IAI46_17835 0.87 -1.1
3,759,191 - IAI46_17835 0.87 +0.2
3,759,201 - IAI46_17835 0.88 -1.0
3,759,201 - IAI46_17835 0.88 -0.0
3,759,205 + IAI46_17835 0.89 -0.1
3,759,205 + IAI46_17835 0.89 -0.5
3,759,206 - IAI46_17835 0.89 +0.4
3,759,239 + +1.1
3,759,278 + +0.4
3,759,278 + -1.1
3,759,279 - -0.9
3,759,319 + +0.7
3,759,319 + +0.2
3,759,319 + +0.5
3,759,320 - +1.3

Or see this region's nucleotide sequence