Strain Fitness in Serratia liquefaciens MT49 around IAI46_16385

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16375 and IAI46_16380 are separated by 3 nucleotidesIAI46_16380 and IAI46_16385 are separated by 2 nucleotidesIAI46_16385 and IAI46_16390 overlap by 1 nucleotidesIAI46_16390 and IAI46_16395 overlap by 4 nucleotides IAI46_16375: IAI46_16375 - 2,3-dehydroadipyl-CoA hydratase, at 3,430,948 to 3,431,721 _16375 IAI46_16380: IAI46_16380 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 3,431,725 to 3,432,516 _16380 IAI46_16385: IAI46_16385 - 3-hydroxyacyl-CoA dehydrogenase, at 3,432,519 to 3,434,039 _16385 IAI46_16390: IAI46_16390 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 3,434,039 to 3,434,479 _16390 IAI46_16395: IAI46_16395 - 3-oxoadipyl-CoA thiolase, at 3,434,476 to 3,435,681 _16395 Position (kb) 3432 3433 3434 3435Strain fitness (log2 ratio) -2 -1 0 1at 3431.707 kb on + strandat 3431.802 kb on + strandat 3431.802 kb on + strandat 3431.870 kb on + strand, within IAI46_16380at 3431.870 kb on + strand, within IAI46_16380at 3431.978 kb on + strand, within IAI46_16380at 3431.990 kb on - strand, within IAI46_16380at 3432.346 kb on + strand, within IAI46_16380at 3432.346 kb on + strand, within IAI46_16380at 3432.791 kb on - strand, within IAI46_16385at 3433.229 kb on + strand, within IAI46_16385at 3433.252 kb on - strand, within IAI46_16385at 3433.448 kb on + strand, within IAI46_16385at 3433.448 kb on + strand, within IAI46_16385at 3433.449 kb on - strand, within IAI46_16385at 3433.449 kb on - strand, within IAI46_16385at 3433.519 kb on + strand, within IAI46_16385at 3433.520 kb on - strand, within IAI46_16385at 3433.520 kb on - strand, within IAI46_16385at 3433.721 kb on - strand, within IAI46_16385at 3433.884 kb on - strand, within IAI46_16385at 3433.888 kb on - strandat 3433.921 kb on + strandat 3433.921 kb on + strandat 3433.968 kb on + strandat 3434.010 kb on + strandat 3434.011 kb on - strandat 3434.050 kb on + strandat 3434.050 kb on + strandat 3434.298 kb on + strand, within IAI46_16390at 3434.298 kb on + strand, within IAI46_16390at 3434.299 kb on - strand, within IAI46_16390at 3434.381 kb on + strand, within IAI46_16390at 3434.896 kb on + strand, within IAI46_16395

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,431,707 + -0.1
3,431,802 + +0.2
3,431,802 + -0.1
3,431,870 + IAI46_16380 0.18 +0.5
3,431,870 + IAI46_16380 0.18 +0.2
3,431,978 + IAI46_16380 0.32 -0.3
3,431,990 - IAI46_16380 0.33 +0.7
3,432,346 + IAI46_16380 0.78 -0.8
3,432,346 + IAI46_16380 0.78 +0.3
3,432,791 - IAI46_16385 0.18 -0.2
3,433,229 + IAI46_16385 0.47 +0.6
3,433,252 - IAI46_16385 0.48 -0.6
3,433,448 + IAI46_16385 0.61 -0.4
3,433,448 + IAI46_16385 0.61 -0.2
3,433,449 - IAI46_16385 0.61 +0.7
3,433,449 - IAI46_16385 0.61 -0.2
3,433,519 + IAI46_16385 0.66 -0.4
3,433,520 - IAI46_16385 0.66 -1.7
3,433,520 - IAI46_16385 0.66 -0.1
3,433,721 - IAI46_16385 0.79 +0.2
3,433,884 - IAI46_16385 0.90 -1.1
3,433,888 - +0.4
3,433,921 + +0.6
3,433,921 + -0.2
3,433,968 + +1.4
3,434,010 + -1.8
3,434,011 - +1.6
3,434,050 + -0.0
3,434,050 + -0.4
3,434,298 + IAI46_16390 0.59 +0.1
3,434,298 + IAI46_16390 0.59 +0.2
3,434,299 - IAI46_16390 0.59 +0.3
3,434,381 + IAI46_16390 0.78 +0.6
3,434,896 + IAI46_16395 0.35 +1.6

Or see this region's nucleotide sequence