Strain Fitness in Serratia liquefaciens MT49 around IAI46_15260

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15245 and IAI46_15250 are separated by 9 nucleotidesIAI46_15250 and IAI46_15255 overlap by 4 nucleotidesIAI46_15255 and IAI46_15260 are separated by 1 nucleotidesIAI46_15260 and IAI46_15265 are separated by 379 nucleotidesIAI46_15265 and IAI46_15270 are separated by 1 nucleotides IAI46_15245: IAI46_15245 - hypothetical protein, at 3,195,502 to 3,196,341 _15245 IAI46_15250: IAI46_15250 - hypothetical protein, at 3,196,351 to 3,196,872 _15250 IAI46_15255: IAI46_15255 - Lar family restriction alleviation protein, at 3,196,869 to 3,197,174 _15255 IAI46_15260: IAI46_15260 - hypothetical protein, at 3,197,176 to 3,197,541 _15260 IAI46_15265: IAI46_15265 - hypothetical protein, at 3,197,921 to 3,198,331 _15265 IAI46_15270: IAI46_15270 - hypothetical protein, at 3,198,333 to 3,198,587 _15270 Position (kb) 3197 3198Strain fitness (log2 ratio) -1 0 1at 3196.183 kb on + strand, within IAI46_15245at 3196.290 kb on + strandat 3196.291 kb on - strandat 3196.339 kb on + strandat 3196.375 kb on + strandat 3196.439 kb on - strand, within IAI46_15250at 3196.549 kb on + strand, within IAI46_15250at 3196.814 kb on - strand, within IAI46_15250at 3196.904 kb on + strand, within IAI46_15255at 3196.956 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.990 kb on - strand, within IAI46_15255at 3197.054 kb on + strand, within IAI46_15255at 3197.112 kb on - strand, within IAI46_15255at 3197.172 kb on + strandat 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.273 kb on + strand, within IAI46_15260at 3197.273 kb on + strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,196,183 + IAI46_15245 0.81 -0.4
3,196,290 + +0.5
3,196,291 - +0.7
3,196,339 + +0.1
3,196,375 + +0.5
3,196,439 - IAI46_15250 0.17 +0.7
3,196,549 + IAI46_15250 0.38 +1.0
3,196,814 - IAI46_15250 0.89 -0.6
3,196,904 + IAI46_15255 0.11 -0.3
3,196,956 + IAI46_15255 0.28 +1.7
3,196,989 + IAI46_15255 0.39 +1.3
3,196,989 + IAI46_15255 0.39 +0.6
3,196,989 + IAI46_15255 0.39 -0.0
3,196,989 + IAI46_15255 0.39 -0.1
3,196,990 - IAI46_15255 0.40 +1.4
3,197,054 + IAI46_15255 0.60 +0.3
3,197,112 - IAI46_15255 0.79 -0.1
3,197,172 + +0.5
3,197,271 + IAI46_15260 0.26 -1.1
3,197,271 + IAI46_15260 0.26 +0.6
3,197,271 + IAI46_15260 0.26 -0.7
3,197,271 + IAI46_15260 0.26 -0.3
3,197,271 + IAI46_15260 0.26 +1.2
3,197,271 + IAI46_15260 0.26 -0.4
3,197,272 - IAI46_15260 0.26 -0.2
3,197,272 - IAI46_15260 0.26 +1.2
3,197,272 - IAI46_15260 0.26 -0.0
3,197,273 + IAI46_15260 0.27 +0.2
3,197,273 + IAI46_15260 0.27 +0.9
3,197,274 - IAI46_15260 0.27 -0.1
3,197,274 - IAI46_15260 0.27 -1.4
3,197,274 - IAI46_15260 0.27 +1.2

Or see this region's nucleotide sequence