Strain Fitness in Serratia liquefaciens MT49 around IAI46_15160

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15145 and IAI46_15150 are separated by 1 nucleotidesIAI46_15150 and IAI46_15155 are separated by 1 nucleotidesIAI46_15155 and IAI46_15160 overlap by 4 nucleotidesIAI46_15160 and IAI46_15165 are separated by 1 nucleotidesIAI46_15165 and IAI46_15170 overlap by 1 nucleotidesIAI46_15170 and IAI46_15175 overlap by 8 nucleotides IAI46_15145: IAI46_15145 - recombination protein NinB, at 3,185,328 to 3,185,795 _15145 IAI46_15150: IAI46_15150 - hypothetical protein, at 3,185,797 to 3,186,009 _15150 IAI46_15155: IAI46_15155 - hypothetical protein, at 3,186,011 to 3,186,457 _15155 IAI46_15160: IAI46_15160 - hypothetical protein, at 3,186,454 to 3,186,621 _15160 IAI46_15165: IAI46_15165 - hypothetical protein, at 3,186,623 to 3,186,901 _15165 IAI46_15170: IAI46_15170 - hypothetical protein, at 3,186,901 to 3,187,089 _15170 IAI46_15175: IAI46_15175 - DNA replication protein, at 3,187,082 to 3,187,795 _15175 Position (kb) 3186 3187Strain fitness (log2 ratio) -2 -1 0 1 2at 3185.597 kb on - strand, within IAI46_15145at 3185.678 kb on + strand, within IAI46_15145at 3185.679 kb on - strand, within IAI46_15145at 3185.689 kb on - strand, within IAI46_15145at 3185.689 kb on - strand, within IAI46_15145at 3185.782 kb on - strandat 3185.810 kb on - strandat 3185.970 kb on - strand, within IAI46_15150at 3185.980 kb on + strand, within IAI46_15150at 3186.009 kb on + strandat 3186.009 kb on + strandat 3186.010 kb on - strandat 3186.025 kb on + strandat 3186.132 kb on + strand, within IAI46_15155at 3186.139 kb on - strand, within IAI46_15155at 3186.244 kb on - strand, within IAI46_15155at 3186.244 kb on - strand, within IAI46_15155at 3186.265 kb on - strand, within IAI46_15155at 3186.300 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.316 kb on + strand, within IAI46_15155at 3186.316 kb on + strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.323 kb on + strand, within IAI46_15155at 3186.340 kb on + strand, within IAI46_15155at 3186.621 kb on + strandat 3186.621 kb on + strandat 3186.621 kb on + strandat 3186.809 kb on + strand, within IAI46_15165at 3186.809 kb on + strand, within IAI46_15165at 3186.810 kb on - strand, within IAI46_15165at 3186.813 kb on + strand, within IAI46_15165at 3186.814 kb on - strand, within IAI46_15165at 3186.814 kb on - strand, within IAI46_15165at 3186.895 kb on + strandat 3186.923 kb on + strand, within IAI46_15170at 3186.924 kb on - strand, within IAI46_15170at 3186.924 kb on - strand, within IAI46_15170at 3186.940 kb on + strand, within IAI46_15170at 3186.947 kb on + strand, within IAI46_15170at 3186.980 kb on + strand, within IAI46_15170at 3186.981 kb on - strand, within IAI46_15170at 3186.994 kb on - strand, within IAI46_15170at 3186.994 kb on - strand, within IAI46_15170at 3187.033 kb on + strand, within IAI46_15170at 3187.034 kb on - strand, within IAI46_15170at 3187.093 kb on + strandat 3187.093 kb on + strandat 3187.111 kb on + strandat 3187.112 kb on - strandat 3187.112 kb on - strandat 3187.224 kb on - strand, within IAI46_15175at 3187.244 kb on + strand, within IAI46_15175at 3187.245 kb on - strand, within IAI46_15175at 3187.245 kb on - strand, within IAI46_15175at 3187.284 kb on - strand, within IAI46_15175at 3187.392 kb on + strand, within IAI46_15175at 3187.410 kb on + strand, within IAI46_15175at 3187.469 kb on + strand, within IAI46_15175at 3187.469 kb on + strand, within IAI46_15175at 3187.470 kb on - strand, within IAI46_15175at 3187.470 kb on - strand, within IAI46_15175at 3187.535 kb on + strand, within IAI46_15175at 3187.536 kb on - strand, within IAI46_15175

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,185,597 - IAI46_15145 0.57 +0.4
3,185,678 + IAI46_15145 0.75 +0.4
3,185,679 - IAI46_15145 0.75 +0.4
3,185,689 - IAI46_15145 0.77 +1.0
3,185,689 - IAI46_15145 0.77 +0.7
3,185,782 - +0.3
3,185,810 - +1.1
3,185,970 - IAI46_15150 0.81 +0.0
3,185,980 + IAI46_15150 0.86 -0.4
3,186,009 + +0.2
3,186,009 + -0.1
3,186,010 - +1.0
3,186,025 + +1.0
3,186,132 + IAI46_15155 0.27 +0.3
3,186,139 - IAI46_15155 0.29 +0.2
3,186,244 - IAI46_15155 0.52 +0.3
3,186,244 - IAI46_15155 0.52 +1.5
3,186,265 - IAI46_15155 0.57 -0.1
3,186,300 + IAI46_15155 0.65 +0.4
3,186,309 + IAI46_15155 0.67 +1.8
3,186,309 + IAI46_15155 0.67 -0.9
3,186,309 + IAI46_15155 0.67 +0.2
3,186,309 + IAI46_15155 0.67 +0.0
3,186,309 + IAI46_15155 0.67 -0.9
3,186,310 - IAI46_15155 0.67 +0.6
3,186,310 - IAI46_15155 0.67 -0.1
3,186,310 - IAI46_15155 0.67 +0.8
3,186,310 - IAI46_15155 0.67 -0.8
3,186,316 + IAI46_15155 0.68 +0.1
3,186,316 + IAI46_15155 0.68 +0.1
3,186,317 - IAI46_15155 0.68 +0.0
3,186,317 - IAI46_15155 0.68 +0.0
3,186,317 - IAI46_15155 0.68 +1.1
3,186,317 - IAI46_15155 0.68 -1.1
3,186,318 + IAI46_15155 0.69 +0.4
3,186,318 + IAI46_15155 0.69 -0.1
3,186,318 + IAI46_15155 0.69 +1.9
3,186,318 + IAI46_15155 0.69 -1.0
3,186,319 - IAI46_15155 0.69 +0.6
3,186,319 - IAI46_15155 0.69 +0.4
3,186,319 - IAI46_15155 0.69 +0.0
3,186,319 - IAI46_15155 0.69 -0.5
3,186,323 + IAI46_15155 0.70 -2.3
3,186,340 + IAI46_15155 0.74 -0.4
3,186,621 + +0.1
3,186,621 + +1.2
3,186,621 + -1.9
3,186,809 + IAI46_15165 0.67 +0.4
3,186,809 + IAI46_15165 0.67 +0.2
3,186,810 - IAI46_15165 0.67 +0.2
3,186,813 + IAI46_15165 0.68 -0.6
3,186,814 - IAI46_15165 0.68 -0.4
3,186,814 - IAI46_15165 0.68 +0.7
3,186,895 + -0.8
3,186,923 + IAI46_15170 0.12 +0.2
3,186,924 - IAI46_15170 0.12 +0.3
3,186,924 - IAI46_15170 0.12 +0.3
3,186,940 + IAI46_15170 0.21 -1.1
3,186,947 + IAI46_15170 0.24 -0.3
3,186,980 + IAI46_15170 0.42 +0.1
3,186,981 - IAI46_15170 0.42 -1.0
3,186,994 - IAI46_15170 0.49 -0.3
3,186,994 - IAI46_15170 0.49 +1.4
3,187,033 + IAI46_15170 0.70 -1.4
3,187,034 - IAI46_15170 0.70 +0.4
3,187,093 + +0.1
3,187,093 + +0.2
3,187,111 + -0.6
3,187,112 - -0.1
3,187,112 - +0.6
3,187,224 - IAI46_15175 0.20 +0.0
3,187,244 + IAI46_15175 0.23 -0.6
3,187,245 - IAI46_15175 0.23 +0.2
3,187,245 - IAI46_15175 0.23 -1.0
3,187,284 - IAI46_15175 0.28 -0.5
3,187,392 + IAI46_15175 0.43 +0.4
3,187,410 + IAI46_15175 0.46 +0.0
3,187,469 + IAI46_15175 0.54 +0.9
3,187,469 + IAI46_15175 0.54 +0.4
3,187,470 - IAI46_15175 0.54 -1.6
3,187,470 - IAI46_15175 0.54 +0.2
3,187,535 + IAI46_15175 0.63 -0.0
3,187,536 - IAI46_15175 0.64 +1.2

Or see this region's nucleotide sequence