Strain Fitness in Serratia liquefaciens MT49 around IAI46_14915

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14905 and IAI46_14910 are separated by 457 nucleotidesIAI46_14910 and IAI46_14915 are separated by 29 nucleotidesIAI46_14915 and IAI46_14920 are separated by 427 nucleotides IAI46_14905: IAI46_14905 - hypothetical protein, at 3,151,149 to 3,151,361 _14905 IAI46_14910: IAI46_14910 - helix-turn-helix domain-containing protein, at 3,151,819 to 3,152,205 _14910 IAI46_14915: IAI46_14915 - DUF1304 domain-containing protein, at 3,152,235 to 3,152,588 _14915 IAI46_14920: IAI46_14920 - pirin family protein, at 3,153,016 to 3,153,957 _14920 Position (kb) 3152 3153Strain fitness (log2 ratio) -1 0 1at 3151.342 kb on + strandat 3151.359 kb on + strandat 3151.493 kb on - strandat 3151.781 kb on - strandat 3151.782 kb on + strandat 3151.793 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.797 kb on + strandat 3151.798 kb on - strandat 3151.798 kb on - strandat 3151.824 kb on - strandat 3151.860 kb on + strand, within IAI46_14910at 3151.915 kb on + strand, within IAI46_14910at 3151.925 kb on - strand, within IAI46_14910at 3151.984 kb on + strand, within IAI46_14910at 3152.096 kb on - strand, within IAI46_14910at 3152.096 kb on - strand, within IAI46_14910at 3152.097 kb on + strand, within IAI46_14910at 3152.098 kb on - strand, within IAI46_14910at 3152.262 kb on - strandat 3152.423 kb on - strand, within IAI46_14915at 3152.423 kb on - strand, within IAI46_14915at 3152.423 kb on - strand, within IAI46_14915at 3152.537 kb on - strand, within IAI46_14915at 3152.555 kb on + strandat 3152.570 kb on + strandat 3152.570 kb on + strandat 3152.584 kb on - strandat 3152.624 kb on + strandat 3152.625 kb on - strandat 3152.629 kb on - strandat 3152.656 kb on + strandat 3152.709 kb on + strandat 3152.710 kb on - strandat 3152.768 kb on - strandat 3152.798 kb on + strandat 3152.799 kb on - strandat 3152.810 kb on - strandat 3152.812 kb on + strandat 3152.842 kb on + strandat 3152.863 kb on - strandat 3152.916 kb on + strandat 3152.971 kb on - strandat 3153.001 kb on + strandat 3153.124 kb on - strand, within IAI46_14920at 3153.199 kb on + strand, within IAI46_14920at 3153.199 kb on + strand, within IAI46_14920at 3153.254 kb on - strand, within IAI46_14920at 3153.319 kb on + strand, within IAI46_14920at 3153.319 kb on + strand, within IAI46_14920at 3153.325 kb on + strand, within IAI46_14920at 3153.425 kb on + strand, within IAI46_14920at 3153.425 kb on + strand, within IAI46_14920at 3153.448 kb on + strand, within IAI46_14920at 3153.494 kb on + strand, within IAI46_14920

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,151,342 + +0.9
3,151,359 + +0.3
3,151,493 - +1.1
3,151,781 - +1.0
3,151,782 + -0.9
3,151,793 + +0.3
3,151,797 + +0.7
3,151,797 + -0.5
3,151,797 + +0.5
3,151,797 + +1.0
3,151,798 - -0.9
3,151,798 - -1.0
3,151,824 - -0.7
3,151,860 + IAI46_14910 0.11 +0.2
3,151,915 + IAI46_14910 0.25 -0.1
3,151,925 - IAI46_14910 0.27 -0.4
3,151,984 + IAI46_14910 0.43 +0.4
3,152,096 - IAI46_14910 0.72 -0.4
3,152,096 - IAI46_14910 0.72 -0.1
3,152,097 + IAI46_14910 0.72 +0.4
3,152,098 - IAI46_14910 0.72 -0.8
3,152,262 - +0.3
3,152,423 - IAI46_14915 0.53 +0.4
3,152,423 - IAI46_14915 0.53 -0.3
3,152,423 - IAI46_14915 0.53 +0.5
3,152,537 - IAI46_14915 0.85 +0.1
3,152,555 + +0.1
3,152,570 + +0.2
3,152,570 + +1.2
3,152,584 - -0.4
3,152,624 + +1.4
3,152,625 - +0.1
3,152,629 - +0.2
3,152,656 + +0.2
3,152,709 + +0.8
3,152,710 - +0.6
3,152,768 - -0.5
3,152,798 + +1.0
3,152,799 - +0.2
3,152,810 - -0.1
3,152,812 + -0.4
3,152,842 + -0.0
3,152,863 - +0.2
3,152,916 + -0.7
3,152,971 - +0.4
3,153,001 + -1.2
3,153,124 - IAI46_14920 0.11 +0.9
3,153,199 + IAI46_14920 0.19 +0.9
3,153,199 + IAI46_14920 0.19 +0.3
3,153,254 - IAI46_14920 0.25 +0.0
3,153,319 + IAI46_14920 0.32 -0.9
3,153,319 + IAI46_14920 0.32 -1.1
3,153,325 + IAI46_14920 0.33 +0.6
3,153,425 + IAI46_14920 0.43 +0.2
3,153,425 + IAI46_14920 0.43 -1.6
3,153,448 + IAI46_14920 0.46 +0.3
3,153,494 + IAI46_14920 0.51 -0.1

Or see this region's nucleotide sequence