Strain Fitness in Serratia liquefaciens MT49 around IAI46_13970

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13965 and IAI46_13970 are separated by 360 nucleotidesIAI46_13970 and IAI46_13975 are separated by 426 nucleotidesIAI46_13975 and IAI46_13980 are separated by 47 nucleotides IAI46_13965: IAI46_13965 - HTH-type transcriptional regulator CysB, at 2,965,337 to 2,966,311 _13965 IAI46_13970: IAI46_13970 - type I DNA topoisomerase, at 2,966,672 to 2,969,269 _13970 IAI46_13975: IAI46_13975 - YciN family protein, at 2,969,696 to 2,969,947 _13975 IAI46_13980: IAI46_13980 - protease SohB, at 2,969,995 to 2,971,041 _13980 Position (kb) 2966 2967 2968 2969 2970Strain fitness (log2 ratio) -1 0 1 2at 2966.327 kb on - strandat 2966.327 kb on - strandat 2966.358 kb on + strandat 2966.359 kb on - strandat 2966.390 kb on - strandat 2966.393 kb on - strandat 2966.527 kb on + strandat 2966.754 kb on + strandat 2966.755 kb on - strandat 2966.755 kb on - strandat 2966.909 kb on - strandat 2966.918 kb on - strandat 2966.965 kb on - strand, within IAI46_13970at 2966.965 kb on - strand, within IAI46_13970at 2966.965 kb on - strand, within IAI46_13970at 2967.088 kb on - strand, within IAI46_13970at 2969.539 kb on - strandat 2969.562 kb on - strandat 2969.628 kb on - strandat 2969.664 kb on + strandat 2969.665 kb on - strandat 2969.707 kb on + strandat 2969.734 kb on - strand, within IAI46_13975at 2969.749 kb on + strand, within IAI46_13975at 2969.891 kb on - strand, within IAI46_13975at 2969.893 kb on + strand, within IAI46_13975at 2969.900 kb on - strand, within IAI46_13975at 2969.930 kb on + strandat 2969.945 kb on + strandat 2970.032 kb on - strandat 2970.032 kb on - strandat 2970.102 kb on - strand, within IAI46_13980

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,966,327 - +0.6
2,966,327 - +0.8
2,966,358 + -0.6
2,966,359 - +0.3
2,966,390 - +1.2
2,966,393 - +0.0
2,966,527 + -0.1
2,966,754 + +2.7
2,966,755 - +1.6
2,966,755 - +1.4
2,966,909 - +0.1
2,966,918 - +0.7
2,966,965 - IAI46_13970 0.11 +0.2
2,966,965 - IAI46_13970 0.11 +0.9
2,966,965 - IAI46_13970 0.11 +1.4
2,967,088 - IAI46_13970 0.16 -0.6
2,969,539 - +0.4
2,969,562 - +0.4
2,969,628 - +0.4
2,969,664 + -1.2
2,969,665 - -0.9
2,969,707 + -0.1
2,969,734 - IAI46_13975 0.15 -0.8
2,969,749 + IAI46_13975 0.21 +0.1
2,969,891 - IAI46_13975 0.77 -0.7
2,969,893 + IAI46_13975 0.78 -0.1
2,969,900 - IAI46_13975 0.81 -0.6
2,969,930 + +1.4
2,969,945 + -0.0
2,970,032 - -1.2
2,970,032 - +0.2
2,970,102 - IAI46_13980 0.10 -0.8

Or see this region's nucleotide sequence