Strain Fitness in Serratia liquefaciens MT49 around IAI46_13625

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13615 and IAI46_13620 are separated by 61 nucleotidesIAI46_13620 and IAI46_13625 overlap by 4 nucleotidesIAI46_13625 and IAI46_13630 are separated by 2 nucleotidesIAI46_13630 and IAI46_13635 are separated by 171 nucleotidesIAI46_13635 and IAI46_13640 are separated by 67 nucleotides IAI46_13615: IAI46_13615 - Ig domain-containing protein, at 2,909,531 to 2,910,280 _13615 IAI46_13620: IAI46_13620 - hypothetical protein, at 2,910,342 to 2,910,725 _13620 IAI46_13625: IAI46_13625 - HK97 gp10 family phage protein, at 2,910,722 to 2,911,120 _13625 IAI46_13630: IAI46_13630 - hypothetical protein, at 2,911,123 to 2,911,470 _13630 IAI46_13635: IAI46_13635 - hypothetical protein, at 2,911,642 to 2,912,040 _13635 IAI46_13640: IAI46_13640 - hypothetical protein, at 2,912,108 to 2,912,401 _13640 Position (kb) 2910 2911 2912Strain fitness (log2 ratio) -1 0 1 2at 2909.763 kb on - strand, within IAI46_13615at 2909.813 kb on - strand, within IAI46_13615at 2909.855 kb on - strand, within IAI46_13615at 2909.910 kb on + strand, within IAI46_13615at 2909.911 kb on - strand, within IAI46_13615at 2909.911 kb on - strand, within IAI46_13615at 2909.914 kb on + strand, within IAI46_13615at 2909.930 kb on + strand, within IAI46_13615at 2909.995 kb on + strand, within IAI46_13615at 2909.996 kb on - strand, within IAI46_13615at 2909.996 kb on - strand, within IAI46_13615at 2910.019 kb on - strand, within IAI46_13615at 2910.070 kb on - strand, within IAI46_13615at 2910.081 kb on - strand, within IAI46_13615at 2910.134 kb on - strand, within IAI46_13615at 2910.155 kb on - strand, within IAI46_13615at 2910.189 kb on - strand, within IAI46_13615at 2910.333 kb on + strandat 2910.333 kb on + strandat 2910.334 kb on - strandat 2910.334 kb on - strandat 2910.334 kb on - strandat 2910.404 kb on + strand, within IAI46_13620at 2910.405 kb on - strand, within IAI46_13620at 2910.405 kb on - strand, within IAI46_13620at 2910.426 kb on + strand, within IAI46_13620at 2910.709 kb on + strandat 2910.709 kb on + strandat 2910.879 kb on + strand, within IAI46_13625at 2910.880 kb on - strand, within IAI46_13625at 2910.893 kb on - strand, within IAI46_13625at 2910.901 kb on - strand, within IAI46_13625at 2910.901 kb on - strand, within IAI46_13625at 2910.917 kb on - strand, within IAI46_13625at 2910.989 kb on - strand, within IAI46_13625at 2911.065 kb on - strand, within IAI46_13625at 2911.065 kb on - strand, within IAI46_13625at 2911.186 kb on + strand, within IAI46_13630at 2911.187 kb on - strand, within IAI46_13630at 2911.187 kb on - strand, within IAI46_13630at 2911.187 kb on - strand, within IAI46_13630at 2911.196 kb on - strand, within IAI46_13630at 2911.225 kb on + strand, within IAI46_13630at 2911.233 kb on + strand, within IAI46_13630at 2911.250 kb on - strand, within IAI46_13630at 2911.254 kb on - strand, within IAI46_13630at 2911.459 kb on + strandat 2911.659 kb on + strandat 2911.660 kb on - strandat 2911.660 kb on - strandat 2911.698 kb on + strand, within IAI46_13635at 2911.699 kb on - strand, within IAI46_13635at 2911.739 kb on + strand, within IAI46_13635at 2911.760 kb on - strand, within IAI46_13635at 2911.760 kb on - strand, within IAI46_13635at 2911.886 kb on + strand, within IAI46_13635at 2911.996 kb on - strand, within IAI46_13635at 2912.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,909,763 - IAI46_13615 0.31 +0.9
2,909,813 - IAI46_13615 0.38 -0.3
2,909,855 - IAI46_13615 0.43 -0.1
2,909,910 + IAI46_13615 0.51 +0.0
2,909,911 - IAI46_13615 0.51 +1.1
2,909,911 - IAI46_13615 0.51 -0.8
2,909,914 + IAI46_13615 0.51 -0.1
2,909,930 + IAI46_13615 0.53 +0.3
2,909,995 + IAI46_13615 0.62 -0.5
2,909,996 - IAI46_13615 0.62 +0.2
2,909,996 - IAI46_13615 0.62 +1.1
2,910,019 - IAI46_13615 0.65 +0.8
2,910,070 - IAI46_13615 0.72 +0.9
2,910,081 - IAI46_13615 0.73 +1.5
2,910,134 - IAI46_13615 0.80 -0.2
2,910,155 - IAI46_13615 0.83 +1.4
2,910,189 - IAI46_13615 0.88 -1.3
2,910,333 + -0.3
2,910,333 + -0.2
2,910,334 - +0.4
2,910,334 - -1.5
2,910,334 - +0.1
2,910,404 + IAI46_13620 0.16 +0.6
2,910,405 - IAI46_13620 0.16 +0.0
2,910,405 - IAI46_13620 0.16 -0.6
2,910,426 + IAI46_13620 0.22 +0.9
2,910,709 + +1.8
2,910,709 + +0.1
2,910,879 + IAI46_13625 0.39 +0.1
2,910,880 - IAI46_13625 0.40 -0.2
2,910,893 - IAI46_13625 0.43 +1.0
2,910,901 - IAI46_13625 0.45 +1.6
2,910,901 - IAI46_13625 0.45 -0.0
2,910,917 - IAI46_13625 0.49 +0.3
2,910,989 - IAI46_13625 0.67 -0.0
2,911,065 - IAI46_13625 0.86 -0.6
2,911,065 - IAI46_13625 0.86 +0.0
2,911,186 + IAI46_13630 0.18 +1.3
2,911,187 - IAI46_13630 0.18 +0.1
2,911,187 - IAI46_13630 0.18 -0.8
2,911,187 - IAI46_13630 0.18 +1.6
2,911,196 - IAI46_13630 0.21 -0.5
2,911,225 + IAI46_13630 0.29 +0.1
2,911,233 + IAI46_13630 0.32 +0.8
2,911,250 - IAI46_13630 0.36 -0.1
2,911,254 - IAI46_13630 0.38 +0.1
2,911,459 + -1.4
2,911,659 + +2.2
2,911,660 - +0.9
2,911,660 - +0.0
2,911,698 + IAI46_13635 0.14 -0.8
2,911,699 - IAI46_13635 0.14 -0.0
2,911,739 + IAI46_13635 0.24 -0.0
2,911,760 - IAI46_13635 0.30 -0.1
2,911,760 - IAI46_13635 0.30 +0.7
2,911,886 + IAI46_13635 0.61 +0.8
2,911,996 - IAI46_13635 0.89 +0.3
2,912,013 - +0.7

Or see this region's nucleotide sequence