Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13060 and IAI46_13065 are separated by 141 nucleotides IAI46_13065 and IAI46_13070 are separated by 0 nucleotides IAI46_13070 and IAI46_13075 are separated by 102 nucleotides
IAI46_13060: IAI46_13060 - sugar phosphate isomerase/epimerase, at 2,787,698 to 2,788,753
_13060
IAI46_13065: IAI46_13065 - TetR/AcrR family transcriptional regulator, at 2,788,895 to 2,789,479
_13065
IAI46_13070: IAI46_13070 - cupin domain-containing protein, at 2,789,480 to 2,789,782
_13070
IAI46_13075: IAI46_13075 - KUP/HAK/KT family potassium transporter, at 2,789,885 to 2,791,765
_13075
Position (kb)
2788
2789
2790 Strain fitness (log2 ratio)
-2
-1
0
1 at 2787.981 kb on + strand, within IAI46_13060 at 2788.050 kb on + strand, within IAI46_13060 at 2788.062 kb on + strand, within IAI46_13060 at 2788.062 kb on + strand, within IAI46_13060 at 2788.063 kb on - strand, within IAI46_13060 at 2788.072 kb on - strand, within IAI46_13060 at 2788.112 kb on + strand, within IAI46_13060 at 2788.112 kb on + strand, within IAI46_13060 at 2788.314 kb on - strand, within IAI46_13060 at 2788.317 kb on + strand, within IAI46_13060 at 2788.476 kb on + strand, within IAI46_13060 at 2788.575 kb on + strand, within IAI46_13060 at 2788.575 kb on + strand, within IAI46_13060 at 2788.757 kb on - strand at 2788.839 kb on - strand at 2788.839 kb on - strand at 2788.844 kb on - strand at 2789.302 kb on + strand, within IAI46_13065 at 2789.644 kb on - strand, within IAI46_13070 at 2789.644 kb on - strand, within IAI46_13070 at 2789.695 kb on + strand, within IAI46_13070 at 2789.720 kb on + strand, within IAI46_13070 at 2789.775 kb on - strand at 2789.783 kb on - strand at 2789.783 kb on - strand at 2789.866 kb on + strand at 2789.872 kb on - strand at 2789.934 kb on + strand at 2790.052 kb on - strand at 2790.056 kb on - strand at 2790.056 kb on - strand at 2790.101 kb on + strand, within IAI46_13075 at 2790.116 kb on - strand, within IAI46_13075 at 2790.353 kb on - strand, within IAI46_13075 at 2790.444 kb on - strand, within IAI46_13075
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 2,787,981 + IAI46_13060 0.27 -0.5 2,788,050 + IAI46_13060 0.33 -0.2 2,788,062 + IAI46_13060 0.34 +1.0 2,788,062 + IAI46_13060 0.34 -0.9 2,788,063 - IAI46_13060 0.35 -0.7 2,788,072 - IAI46_13060 0.35 +1.7 2,788,112 + IAI46_13060 0.39 -0.7 2,788,112 + IAI46_13060 0.39 -0.2 2,788,314 - IAI46_13060 0.58 +0.3 2,788,317 + IAI46_13060 0.59 +1.0 2,788,476 + IAI46_13060 0.74 -2.3 2,788,575 + IAI46_13060 0.83 +1.0 2,788,575 + IAI46_13060 0.83 -0.0 2,788,757 - -0.1 2,788,839 - +0.3 2,788,839 - -1.1 2,788,844 - +0.1 2,789,302 + IAI46_13065 0.70 +0.5 2,789,644 - IAI46_13070 0.54 -1.2 2,789,644 - IAI46_13070 0.54 -1.1 2,789,695 + IAI46_13070 0.71 +1.3 2,789,720 + IAI46_13070 0.79 +0.8 2,789,775 - -0.2 2,789,783 - -0.6 2,789,783 - -0.2 2,789,866 + -0.1 2,789,872 - +0.2 2,789,934 + +0.5 2,790,052 - +0.2 2,790,056 - +0.5 2,790,056 - -0.7 2,790,101 + IAI46_13075 0.11 -0.9 2,790,116 - IAI46_13075 0.12 -0.2 2,790,353 - IAI46_13075 0.25 +0.3 2,790,444 - IAI46_13075 0.30 +0.3
Or see this region's nucleotide sequence