Strain Fitness in Serratia liquefaciens MT49 around IAI46_04440

Experiment: copper (II) chloride 15 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04435 and IAI46_04440 are separated by 174 nucleotidesIAI46_04440 and IAI46_04445 are separated by 383 nucleotides IAI46_04435: IAI46_04435 - glutamate-5-semialdehyde dehydrogenase, at 948,880 to 950,133 _04435 IAI46_04440: IAI46_04440 - hypothetical protein, at 950,308 to 950,847 _04440 IAI46_04445: IAI46_04445 - cytochrome b561, at 951,231 to 951,755 _04445 Position (kb) 950 951Strain fitness (log2 ratio) -2 -1 0 1 2at 949.314 kb on + strand, within IAI46_04435at 949.330 kb on - strand, within IAI46_04435at 949.464 kb on + strand, within IAI46_04435at 949.465 kb on - strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.638 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.972 kb on + strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 950.092 kb on + strandat 950.093 kb on - strandat 950.131 kb on + strandat 950.132 kb on - strandat 950.139 kb on - strandat 950.142 kb on - strandat 950.142 kb on - strandat 950.142 kb on - strandat 950.161 kb on + strandat 950.162 kb on - strandat 950.190 kb on + strandat 950.191 kb on + strandat 950.221 kb on + strandat 950.264 kb on - strandat 950.322 kb on + strandat 950.380 kb on - strand, within IAI46_04440at 950.381 kb on + strand, within IAI46_04440at 950.389 kb on - strand, within IAI46_04440at 950.450 kb on + strand, within IAI46_04440at 950.451 kb on - strand, within IAI46_04440at 950.498 kb on + strand, within IAI46_04440at 950.509 kb on + strand, within IAI46_04440at 950.525 kb on - strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.536 kb on - strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.605 kb on - strand, within IAI46_04440at 950.615 kb on + strand, within IAI46_04440at 950.616 kb on - strand, within IAI46_04440at 950.642 kb on + strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.886 kb on + strandat 950.942 kb on + strandat 950.943 kb on - strandat 950.943 kb on - strandat 950.975 kb on - strandat 951.068 kb on + strandat 951.068 kb on + strandat 951.104 kb on - strandat 951.104 kb on - strandat 951.107 kb on + strandat 951.120 kb on - strandat 951.121 kb on + strandat 951.200 kb on - strandat 951.257 kb on + strandat 951.258 kb on - strandat 951.284 kb on + strand, within IAI46_04445at 951.284 kb on + strand, within IAI46_04445at 951.285 kb on - strand, within IAI46_04445at 951.285 kb on - strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.287 kb on - strand, within IAI46_04445at 951.354 kb on - strand, within IAI46_04445at 951.366 kb on - strand, within IAI46_04445at 951.448 kb on + strand, within IAI46_04445at 951.458 kb on - strand, within IAI46_04445at 951.458 kb on - strand, within IAI46_04445at 951.609 kb on + strand, within IAI46_04445at 951.610 kb on - strand, within IAI46_04445at 951.610 kb on - strand, within IAI46_04445at 951.649 kb on + strand, within IAI46_04445at 951.649 kb on + strand, within IAI46_04445at 951.755 kb on + strandat 951.755 kb on + strandat 951.756 kb on - strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.777 kb on - strandat 951.823 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
remove
949,314 + IAI46_04435 0.35 -1.6
949,330 - IAI46_04435 0.36 -0.8
949,464 + IAI46_04435 0.47 +0.3
949,465 - IAI46_04435 0.47 -0.4
949,561 + IAI46_04435 0.54 -0.8
949,561 + IAI46_04435 0.54 -2.0
949,561 + IAI46_04435 0.54 -1.6
949,561 + IAI46_04435 0.54 -1.1
949,562 - IAI46_04435 0.54 +0.2
949,562 - IAI46_04435 0.54 -0.2
949,638 + IAI46_04435 0.60 -0.2
949,804 + IAI46_04435 0.74 -0.6
949,804 + IAI46_04435 0.74 -0.7
949,970 + IAI46_04435 0.87 -1.6
949,970 + IAI46_04435 0.87 +0.0
949,970 + IAI46_04435 0.87 -0.3
949,970 + IAI46_04435 0.87 +0.4
949,972 + IAI46_04435 0.87 -0.2
949,973 - IAI46_04435 0.87 -2.0
949,973 - IAI46_04435 0.87 -1.5
949,973 - IAI46_04435 0.87 -0.6
950,092 + +0.6
950,093 - -0.8
950,131 + +1.2
950,132 - -0.7
950,139 - +0.6
950,142 - +0.2
950,142 - +0.7
950,142 - +1.4
950,161 + -0.1
950,162 - -0.7
950,190 + -0.5
950,191 + +0.5
950,221 + -0.1
950,264 - +0.4
950,322 + +1.5
950,380 - IAI46_04440 0.13 +0.6
950,381 + IAI46_04440 0.14 -0.3
950,389 - IAI46_04440 0.15 -0.6
950,450 + IAI46_04440 0.26 -0.2
950,451 - IAI46_04440 0.26 -0.2
950,498 + IAI46_04440 0.35 +0.6
950,509 + IAI46_04440 0.37 +0.4
950,525 - IAI46_04440 0.40 +0.5
950,535 + IAI46_04440 0.42 -0.1
950,535 + IAI46_04440 0.42 +1.1
950,536 - IAI46_04440 0.42 +0.5
950,604 + IAI46_04440 0.55 -1.0
950,604 + IAI46_04440 0.55 -0.6
950,605 - IAI46_04440 0.55 +0.3
950,615 + IAI46_04440 0.57 -0.1
950,616 - IAI46_04440 0.57 +0.6
950,642 + IAI46_04440 0.62 +1.2
950,643 - IAI46_04440 0.62 -0.4
950,643 - IAI46_04440 0.62 +0.2
950,725 + IAI46_04440 0.77 +0.4
950,725 + IAI46_04440 0.77 +0.6
950,726 - IAI46_04440 0.77 -1.3
950,726 - IAI46_04440 0.77 +0.5
950,770 - IAI46_04440 0.86 -0.6
950,770 - IAI46_04440 0.86 +2.6
950,886 + -0.3
950,942 + -0.6
950,943 - -1.7
950,943 - +0.8
950,975 - -1.4
951,068 + -1.1
951,068 + +0.3
951,104 - +0.3
951,104 - +1.9
951,107 + -0.5
951,120 - +1.5
951,121 + +0.3
951,200 - +0.8
951,257 + -0.9
951,258 - +2.1
951,284 + IAI46_04445 0.10 +2.3
951,284 + IAI46_04445 0.10 -0.9
951,285 - IAI46_04445 0.10 +0.4
951,285 - IAI46_04445 0.10 +0.2
951,286 + IAI46_04445 0.10 -0.9
951,286 + IAI46_04445 0.10 +0.8
951,286 + IAI46_04445 0.10 +0.2
951,287 - IAI46_04445 0.11 -0.9
951,354 - IAI46_04445 0.23 -0.2
951,366 - IAI46_04445 0.26 +0.7
951,448 + IAI46_04445 0.41 -0.5
951,458 - IAI46_04445 0.43 -1.7
951,458 - IAI46_04445 0.43 -1.2
951,609 + IAI46_04445 0.72 -0.0
951,610 - IAI46_04445 0.72 +1.1
951,610 - IAI46_04445 0.72 +0.1
951,649 + IAI46_04445 0.80 -0.9
951,649 + IAI46_04445 0.80 +0.5
951,755 + +0.7
951,755 + -0.7
951,756 - +0.1
951,757 + -0.8
951,757 + +0.3
951,757 + +0.7
951,757 + +0.1
951,758 - -1.4
951,758 - -0.1
951,758 - +0.2
951,758 - -0.2
951,777 - +0.3
951,823 - +1.1

Or see this region's nucleotide sequence