Strain Fitness in Serratia liquefaciens MT49 around IAI46_04360

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04350 and IAI46_04355 are separated by 255 nucleotidesIAI46_04355 and IAI46_04360 are separated by 5 nucleotidesIAI46_04360 and IAI46_04365 are separated by 3 nucleotides IAI46_04350: IAI46_04350 - murein L,D-transpeptidase, at 932,828 to 933,598 _04350 IAI46_04355: IAI46_04355 - hypothetical protein, at 933,854 to 934,171 _04355 IAI46_04360: IAI46_04360 - Na(+)-translocating NADH-quinone reductase subunit A, at 934,177 to 935,526 _04360 IAI46_04365: IAI46_04365 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 935,530 to 936,771 _04365 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1at 933.178 kb on - strand, within IAI46_04350at 933.216 kb on + strand, within IAI46_04350at 933.217 kb on - strand, within IAI46_04350at 933.229 kb on - strand, within IAI46_04350at 933.242 kb on - strand, within IAI46_04350at 933.269 kb on + strand, within IAI46_04350at 933.269 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.282 kb on + strand, within IAI46_04350at 933.283 kb on - strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.286 kb on + strand, within IAI46_04350at 933.287 kb on - strand, within IAI46_04350at 933.287 kb on - strand, within IAI46_04350at 933.319 kb on + strand, within IAI46_04350at 933.320 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.436 kb on - strand, within IAI46_04350at 933.465 kb on - strand, within IAI46_04350at 933.472 kb on + strand, within IAI46_04350at 933.473 kb on - strand, within IAI46_04350at 933.474 kb on + strand, within IAI46_04350at 933.475 kb on - strand, within IAI46_04350at 933.491 kb on + strand, within IAI46_04350at 933.503 kb on - strand, within IAI46_04350at 933.600 kb on - strandat 933.602 kb on + strandat 933.602 kb on + strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.613 kb on - strandat 933.614 kb on + strandat 933.615 kb on - strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.618 kb on + strandat 933.635 kb on + strandat 933.635 kb on + strandat 933.660 kb on + strandat 933.660 kb on + strandat 933.669 kb on - strandat 933.677 kb on - strandat 933.693 kb on - strandat 933.710 kb on + strandat 933.711 kb on - strandat 933.727 kb on + strandat 933.729 kb on + strandat 933.790 kb on + strandat 933.807 kb on - strandat 933.866 kb on - strandat 933.883 kb on + strandat 933.894 kb on + strand, within IAI46_04355at 933.895 kb on - strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.921 kb on + strand, within IAI46_04355at 933.922 kb on - strand, within IAI46_04355at 933.962 kb on - strand, within IAI46_04355at 933.962 kb on - strand, within IAI46_04355at 934.003 kb on - strand, within IAI46_04355at 934.076 kb on - strand, within IAI46_04355at 934.091 kb on - strand, within IAI46_04355at 934.091 kb on - strand, within IAI46_04355at 934.140 kb on + strandat 934.168 kb on - strandat 934.169 kb on + strandat 934.170 kb on - strandat 934.170 kb on - strandat 934.176 kb on + strandat 934.183 kb on - strandat 934.283 kb on - strandat 934.356 kb on + strand, within IAI46_04360at 934.374 kb on - strand, within IAI46_04360at 934.406 kb on + strand, within IAI46_04360at 934.407 kb on - strand, within IAI46_04360at 934.636 kb on - strand, within IAI46_04360at 934.704 kb on + strand, within IAI46_04360at 934.704 kb on + strand, within IAI46_04360at 934.807 kb on + strand, within IAI46_04360at 934.807 kb on + strand, within IAI46_04360at 934.807 kb on + strand, within IAI46_04360at 934.808 kb on - strand, within IAI46_04360at 934.809 kb on + strand, within IAI46_04360at 935.103 kb on + strand, within IAI46_04360at 935.128 kb on + strand, within IAI46_04360at 935.128 kb on + strand, within IAI46_04360at 935.223 kb on + strand, within IAI46_04360at 935.224 kb on - strand, within IAI46_04360at 935.310 kb on - strand, within IAI46_04360at 935.323 kb on + strand, within IAI46_04360at 935.323 kb on + strand, within IAI46_04360at 935.323 kb on + strand, within IAI46_04360at 935.324 kb on - strand, within IAI46_04360at 935.324 kb on - strand, within IAI46_04360at 935.324 kb on - strand, within IAI46_04360at 935.470 kb on + strandat 935.470 kb on + strandat 935.470 kb on + strandat 935.476 kb on + strandat 935.477 kb on - strandat 935.477 kb on - strandat 935.742 kb on + strand, within IAI46_04365at 935.742 kb on + strand, within IAI46_04365at 935.743 kb on - strand, within IAI46_04365at 935.743 kb on - strand, within IAI46_04365at 935.746 kb on + strand, within IAI46_04365at 935.746 kb on + strand, within IAI46_04365at 935.746 kb on + strand, within IAI46_04365at 935.746 kb on + strand, within IAI46_04365at 935.747 kb on - strand, within IAI46_04365at 935.747 kb on - strand, within IAI46_04365at 935.747 kb on - strand, within IAI46_04365at 935.911 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.926 kb on + strand, within IAI46_04365at 935.927 kb on - strand, within IAI46_04365at 935.994 kb on + strand, within IAI46_04365at 936.013 kb on - strand, within IAI46_04365at 936.078 kb on + strand, within IAI46_04365at 936.079 kb on - strand, within IAI46_04365at 936.465 kb on + strand, within IAI46_04365at 936.480 kb on + strand, within IAI46_04365at 936.480 kb on + strand, within IAI46_04365at 936.481 kb on - strand, within IAI46_04365at 936.483 kb on + strand, within IAI46_04365at 936.483 kb on + strand, within IAI46_04365at 936.484 kb on - strand, within IAI46_04365at 936.486 kb on + strand, within IAI46_04365at 936.486 kb on + strand, within IAI46_04365at 936.511 kb on + strand, within IAI46_04365at 936.512 kb on - strand, within IAI46_04365

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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933,178 - IAI46_04350 0.45 +0.6
933,216 + IAI46_04350 0.50 -0.6
933,217 - IAI46_04350 0.50 +1.2
933,229 - IAI46_04350 0.52 +0.1
933,242 - IAI46_04350 0.54 +0.1
933,269 + IAI46_04350 0.57 -0.2
933,269 + IAI46_04350 0.57 +0.5
933,282 + IAI46_04350 0.59 +0.5
933,282 + IAI46_04350 0.59 +0.5
933,282 + IAI46_04350 0.59 +0.0
933,282 + IAI46_04350 0.59 +0.2
933,282 + IAI46_04350 0.59 -0.3
933,283 - IAI46_04350 0.59 +1.0
933,286 + IAI46_04350 0.59 -0.4
933,286 + IAI46_04350 0.59 +1.1
933,286 + IAI46_04350 0.59 -1.0
933,287 - IAI46_04350 0.60 +0.0
933,287 - IAI46_04350 0.60 +0.5
933,319 + IAI46_04350 0.64 +0.2
933,320 - IAI46_04350 0.64 -0.3
933,436 - IAI46_04350 0.79 -1.6
933,436 - IAI46_04350 0.79 +0.8
933,436 - IAI46_04350 0.79 -1.2
933,436 - IAI46_04350 0.79 -0.7
933,436 - IAI46_04350 0.79 +0.5
933,465 - IAI46_04350 0.83 -0.5
933,472 + IAI46_04350 0.84 +0.7
933,473 - IAI46_04350 0.84 +0.0
933,474 + IAI46_04350 0.84 +0.1
933,475 - IAI46_04350 0.84 +0.4
933,491 + IAI46_04350 0.86 -1.4
933,503 - IAI46_04350 0.88 -0.3
933,600 - -0.6
933,602 + +0.6
933,602 + -1.4
933,613 - -0.4
933,613 - +0.8
933,613 - +0.4
933,613 - -0.7
933,614 + +0.6
933,615 - +1.3
933,618 + +0.1
933,618 + -1.0
933,618 + -0.1
933,618 + +0.6
933,635 + -0.5
933,635 + +1.0
933,660 + +0.7
933,660 + -0.3
933,669 - +0.8
933,677 - +0.7
933,693 - +0.4
933,710 + +0.1
933,711 - +0.2
933,727 + +0.3
933,729 + +0.9
933,790 + -0.4
933,807 - +0.4
933,866 - +0.4
933,883 + -0.2
933,894 + IAI46_04355 0.13 +1.2
933,895 - IAI46_04355 0.13 -2.4
933,921 + IAI46_04355 0.21 +0.1
933,921 + IAI46_04355 0.21 -0.4
933,921 + IAI46_04355 0.21 +1.6
933,922 - IAI46_04355 0.21 -0.1
933,962 - IAI46_04355 0.34 +0.7
933,962 - IAI46_04355 0.34 +0.1
934,003 - IAI46_04355 0.47 +1.0
934,076 - IAI46_04355 0.70 +1.3
934,091 - IAI46_04355 0.75 -0.2
934,091 - IAI46_04355 0.75 +0.7
934,140 + +0.5
934,168 - +0.2
934,169 + +1.1
934,170 - +0.8
934,170 - -1.9
934,176 + +0.0
934,183 - -0.1
934,283 - -0.3
934,356 + IAI46_04360 0.13 +0.8
934,374 - IAI46_04360 0.15 -0.6
934,406 + IAI46_04360 0.17 -1.5
934,407 - IAI46_04360 0.17 +0.2
934,636 - IAI46_04360 0.34 +1.3
934,704 + IAI46_04360 0.39 +0.1
934,704 + IAI46_04360 0.39 -0.1
934,807 + IAI46_04360 0.47 +1.3
934,807 + IAI46_04360 0.47 +0.5
934,807 + IAI46_04360 0.47 +0.8
934,808 - IAI46_04360 0.47 +0.5
934,809 + IAI46_04360 0.47 +0.3
935,103 + IAI46_04360 0.69 +0.6
935,128 + IAI46_04360 0.70 +0.0
935,128 + IAI46_04360 0.70 -2.0
935,223 + IAI46_04360 0.77 -0.1
935,224 - IAI46_04360 0.78 -1.3
935,310 - IAI46_04360 0.84 +0.2
935,323 + IAI46_04360 0.85 -1.0
935,323 + IAI46_04360 0.85 -0.2
935,323 + IAI46_04360 0.85 +1.3
935,324 - IAI46_04360 0.85 +0.1
935,324 - IAI46_04360 0.85 -0.2
935,324 - IAI46_04360 0.85 -0.2
935,470 + +0.1
935,470 + +1.0
935,470 + +0.2
935,476 + -0.1
935,477 - -0.0
935,477 - -0.8
935,742 + IAI46_04365 0.17 +0.8
935,742 + IAI46_04365 0.17 +0.4
935,743 - IAI46_04365 0.17 +0.6
935,743 - IAI46_04365 0.17 +0.8
935,746 + IAI46_04365 0.17 +0.0
935,746 + IAI46_04365 0.17 +1.1
935,746 + IAI46_04365 0.17 -0.4
935,746 + IAI46_04365 0.17 -0.9
935,747 - IAI46_04365 0.17 +0.7
935,747 - IAI46_04365 0.17 +0.1
935,747 - IAI46_04365 0.17 +0.4
935,911 + IAI46_04365 0.31 -0.1
935,926 + IAI46_04365 0.32 -0.2
935,926 + IAI46_04365 0.32 +0.2
935,926 + IAI46_04365 0.32 -0.4
935,927 - IAI46_04365 0.32 -1.3
935,994 + IAI46_04365 0.37 +0.5
936,013 - IAI46_04365 0.39 +1.4
936,078 + IAI46_04365 0.44 +0.5
936,079 - IAI46_04365 0.44 +0.7
936,465 + IAI46_04365 0.75 +0.2
936,480 + IAI46_04365 0.76 +0.4
936,480 + IAI46_04365 0.76 +0.2
936,481 - IAI46_04365 0.77 -0.2
936,483 + IAI46_04365 0.77 +0.3
936,483 + IAI46_04365 0.77 +0.5
936,484 - IAI46_04365 0.77 -0.4
936,486 + IAI46_04365 0.77 -1.5
936,486 + IAI46_04365 0.77 +0.3
936,511 + IAI46_04365 0.79 +1.1
936,512 - IAI46_04365 0.79 +0.1

Or see this region's nucleotide sequence