Strain Fitness in Serratia liquefaciens MT49 around IAI46_04270

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04260 and IAI46_04265 overlap by 20 nucleotidesIAI46_04265 and IAI46_04270 are separated by 63 nucleotidesIAI46_04270 and IAI46_04275 overlap by 1 nucleotides IAI46_04260: IAI46_04260 - amino acid ABC transporter permease, at 915,675 to 916,331 _04260 IAI46_04265: IAI46_04265 - amino acid ABC transporter ATP-binding protein, at 916,312 to 917,055 _04265 IAI46_04270: IAI46_04270 - alanine--glyoxylate aminotransferase family protein, at 917,119 to 918,360 _04270 IAI46_04275: IAI46_04275 - allantoate amidohydrolase, at 918,360 to 919,634 _04275 Position (kb) 917 918 919Strain fitness (log2 ratio) -2 -1 0 1at 916.201 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.284 kb on + strandat 916.293 kb on + strandat 916.294 kb on - strandat 916.329 kb on + strandat 916.330 kb on - strandat 916.580 kb on + strand, within IAI46_04265at 916.581 kb on - strand, within IAI46_04265at 916.712 kb on - strand, within IAI46_04265at 916.876 kb on - strand, within IAI46_04265at 917.056 kb on + strandat 917.056 kb on + strandat 917.057 kb on - strandat 917.096 kb on + strandat 917.096 kb on + strandat 917.097 kb on - strandat 917.099 kb on + strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.107 kb on + strandat 917.108 kb on - strandat 917.115 kb on + strandat 917.128 kb on - strandat 917.148 kb on + strandat 917.220 kb on + strandat 917.220 kb on + strandat 917.239 kb on + strandat 917.240 kb on - strandat 917.240 kb on - strandat 917.260 kb on + strand, within IAI46_04270at 917.261 kb on - strand, within IAI46_04270at 917.262 kb on + strand, within IAI46_04270at 917.284 kb on + strand, within IAI46_04270at 917.607 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.854 kb on + strand, within IAI46_04270at 917.863 kb on + strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.890 kb on + strand, within IAI46_04270at 917.891 kb on - strand, within IAI46_04270at 917.988 kb on + strand, within IAI46_04270at 918.226 kb on + strand, within IAI46_04270at 918.226 kb on + strand, within IAI46_04270at 918.237 kb on + strandat 918.340 kb on + strandat 918.446 kb on + strandat 918.447 kb on - strandat 918.471 kb on + strandat 918.472 kb on - strandat 918.610 kb on + strand, within IAI46_04275at 918.651 kb on + strand, within IAI46_04275at 918.652 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.660 kb on - strand, within IAI46_04275at 918.836 kb on + strand, within IAI46_04275at 918.837 kb on - strand, within IAI46_04275at 918.929 kb on + strand, within IAI46_04275at 918.929 kb on + strand, within IAI46_04275at 918.939 kb on + strand, within IAI46_04275at 918.940 kb on - strand, within IAI46_04275at 919.044 kb on - strand, within IAI46_04275at 919.139 kb on - strand, within IAI46_04275at 919.280 kb on + strand, within IAI46_04275at 919.327 kb on + strand, within IAI46_04275at 919.328 kb on - strand, within IAI46_04275

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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916,201 + IAI46_04260 0.80 +0.1
916,215 + IAI46_04260 0.82 +1.4
916,215 + IAI46_04260 0.82 +1.3
916,216 - IAI46_04260 0.82 +0.4
916,216 - IAI46_04260 0.82 +1.2
916,226 + IAI46_04260 0.84 +0.1
916,226 + IAI46_04260 0.84 +0.6
916,284 + -0.0
916,293 + -0.2
916,294 - +0.6
916,329 + +0.3
916,330 - +0.8
916,580 + IAI46_04265 0.36 +0.7
916,581 - IAI46_04265 0.36 -0.0
916,712 - IAI46_04265 0.54 +0.1
916,876 - IAI46_04265 0.76 -1.3
917,056 + +0.5
917,056 + -0.2
917,057 - +0.7
917,096 + +0.3
917,096 + +0.2
917,097 - +1.1
917,099 + +0.8
917,100 - +1.3
917,100 - +0.3
917,100 - -0.8
917,107 + +0.6
917,108 - -0.0
917,115 + +1.1
917,128 - -0.7
917,148 + +0.6
917,220 + -1.1
917,220 + +0.6
917,239 + -0.4
917,240 - +0.7
917,240 - +0.6
917,260 + IAI46_04270 0.11 +0.7
917,261 - IAI46_04270 0.11 -0.2
917,262 + IAI46_04270 0.12 +0.7
917,284 + IAI46_04270 0.13 +0.2
917,607 + IAI46_04270 0.39 +0.8
917,627 + IAI46_04270 0.41 +0.9
917,627 + IAI46_04270 0.41 +0.3
917,627 + IAI46_04270 0.41 -0.2
917,759 + IAI46_04270 0.52 +1.1
917,759 + IAI46_04270 0.52 -0.9
917,759 + IAI46_04270 0.52 +0.8
917,854 + IAI46_04270 0.59 -0.6
917,863 + IAI46_04270 0.60 -0.4
917,864 - IAI46_04270 0.60 +0.5
917,864 - IAI46_04270 0.60 -0.6
917,864 - IAI46_04270 0.60 -0.8
917,864 - IAI46_04270 0.60 -0.1
917,890 + IAI46_04270 0.62 -0.2
917,891 - IAI46_04270 0.62 +0.3
917,988 + IAI46_04270 0.70 -0.0
918,226 + IAI46_04270 0.89 +0.4
918,226 + IAI46_04270 0.89 -0.5
918,237 + +1.0
918,340 + +1.7
918,446 + +0.1
918,447 - +0.3
918,471 + -0.3
918,472 - +0.3
918,610 + IAI46_04275 0.20 +0.1
918,651 + IAI46_04275 0.23 +0.3
918,652 - IAI46_04275 0.23 -0.4
918,660 - IAI46_04275 0.24 +0.2
918,660 - IAI46_04275 0.24 +0.1
918,660 - IAI46_04275 0.24 -0.1
918,836 + IAI46_04275 0.37 -2.2
918,837 - IAI46_04275 0.37 +0.6
918,929 + IAI46_04275 0.45 +0.2
918,929 + IAI46_04275 0.45 +0.8
918,939 + IAI46_04275 0.45 -0.3
918,940 - IAI46_04275 0.45 +0.1
919,044 - IAI46_04275 0.54 +0.2
919,139 - IAI46_04275 0.61 -0.6
919,280 + IAI46_04275 0.72 -0.3
919,327 + IAI46_04275 0.76 -0.1
919,328 - IAI46_04275 0.76 +0.1

Or see this region's nucleotide sequence