Strain Fitness in Serratia liquefaciens MT49 around IAI46_03655

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03650 and IAI46_03655 are separated by 52 nucleotidesIAI46_03655 and IAI46_03660 are separated by 100 nucleotides IAI46_03650: IAI46_03650 - ABC transporter substrate-binding protein, at 793,755 to 794,720 _03650 IAI46_03655: IAI46_03655 - amino acid permease, at 794,773 to 796,155 _03655 IAI46_03660: IAI46_03660 - histidine ammonia-lyase, at 796,256 to 797,791 _03660 Position (kb) 794 795 796 797Strain fitness (log2 ratio) -2 -1 0 1 2at 793.893 kb on - strand, within IAI46_03650at 793.988 kb on + strand, within IAI46_03650at 793.989 kb on - strand, within IAI46_03650at 794.059 kb on + strand, within IAI46_03650at 794.060 kb on - strand, within IAI46_03650at 794.060 kb on - strand, within IAI46_03650at 794.060 kb on - strand, within IAI46_03650at 794.062 kb on + strand, within IAI46_03650at 794.073 kb on - strand, within IAI46_03650at 794.073 kb on - strand, within IAI46_03650at 794.269 kb on + strand, within IAI46_03650at 794.321 kb on + strand, within IAI46_03650at 794.321 kb on + strand, within IAI46_03650at 794.347 kb on + strand, within IAI46_03650at 794.347 kb on + strand, within IAI46_03650at 794.348 kb on - strand, within IAI46_03650at 794.360 kb on - strand, within IAI46_03650at 794.360 kb on - strand, within IAI46_03650at 794.360 kb on - strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.560 kb on + strand, within IAI46_03650at 794.561 kb on - strand, within IAI46_03650at 794.561 kb on - strand, within IAI46_03650at 794.700 kb on + strandat 794.701 kb on - strandat 794.701 kb on - strandat 794.701 kb on - strandat 794.726 kb on + strandat 794.726 kb on + strandat 794.775 kb on - strandat 794.775 kb on - strandat 794.778 kb on - strandat 794.778 kb on - strandat 794.817 kb on + strandat 794.834 kb on + strandat 794.834 kb on + strandat 794.835 kb on - strandat 794.835 kb on - strandat 794.873 kb on + strandat 794.928 kb on + strand, within IAI46_03655at 794.928 kb on + strand, within IAI46_03655at 794.928 kb on + strand, within IAI46_03655at 794.928 kb on + strand, within IAI46_03655at 794.932 kb on + strand, within IAI46_03655at 794.933 kb on - strand, within IAI46_03655at 795.082 kb on - strand, within IAI46_03655at 795.104 kb on + strand, within IAI46_03655at 795.105 kb on - strand, within IAI46_03655at 795.224 kb on + strand, within IAI46_03655at 795.224 kb on + strand, within IAI46_03655at 795.224 kb on + strand, within IAI46_03655at 795.225 kb on - strand, within IAI46_03655at 795.225 kb on - strand, within IAI46_03655at 795.380 kb on + strand, within IAI46_03655at 795.380 kb on + strand, within IAI46_03655at 795.381 kb on - strand, within IAI46_03655at 795.413 kb on + strand, within IAI46_03655at 795.413 kb on + strand, within IAI46_03655at 795.414 kb on - strand, within IAI46_03655at 795.573 kb on + strand, within IAI46_03655at 795.813 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.867 kb on + strand, within IAI46_03655at 795.868 kb on - strand, within IAI46_03655at 795.869 kb on + strand, within IAI46_03655at 795.869 kb on + strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.908 kb on + strand, within IAI46_03655at 795.909 kb on - strand, within IAI46_03655at 795.909 kb on - strand, within IAI46_03655at 795.920 kb on + strand, within IAI46_03655at 795.921 kb on - strand, within IAI46_03655at 795.921 kb on - strand, within IAI46_03655at 795.984 kb on + strand, within IAI46_03655at 796.062 kb on - strandat 796.062 kb on - strandat 796.099 kb on - strandat 796.099 kb on - strandat 796.120 kb on + strandat 796.121 kb on - strandat 796.149 kb on + strandat 796.246 kb on + strandat 796.253 kb on + strandat 796.258 kb on - strandat 796.267 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.366 kb on - strandat 796.368 kb on + strandat 796.368 kb on + strandat 796.369 kb on - strandat 796.631 kb on - strand, within IAI46_03660at 796.646 kb on - strand, within IAI46_03660at 796.723 kb on + strand, within IAI46_03660at 796.842 kb on - strand, within IAI46_03660at 796.950 kb on + strand, within IAI46_03660at 796.961 kb on + strand, within IAI46_03660at 797.061 kb on - strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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793,893 - IAI46_03650 0.14 +0.1
793,988 + IAI46_03650 0.24 -0.4
793,989 - IAI46_03650 0.24 -0.1
794,059 + IAI46_03650 0.31 -0.6
794,060 - IAI46_03650 0.32 +0.2
794,060 - IAI46_03650 0.32 +0.3
794,060 - IAI46_03650 0.32 +0.2
794,062 + IAI46_03650 0.32 +0.6
794,073 - IAI46_03650 0.33 +1.2
794,073 - IAI46_03650 0.33 +0.0
794,269 + IAI46_03650 0.53 +0.2
794,321 + IAI46_03650 0.59 -0.0
794,321 + IAI46_03650 0.59 +0.7
794,347 + IAI46_03650 0.61 +0.1
794,347 + IAI46_03650 0.61 +0.2
794,348 - IAI46_03650 0.61 -0.5
794,360 - IAI46_03650 0.63 +0.1
794,360 - IAI46_03650 0.63 +0.5
794,360 - IAI46_03650 0.63 +0.6
794,560 + IAI46_03650 0.83 -1.3
794,560 + IAI46_03650 0.83 +0.7
794,560 + IAI46_03650 0.83 +0.4
794,560 + IAI46_03650 0.83 +0.3
794,560 + IAI46_03650 0.83 +1.7
794,560 + IAI46_03650 0.83 +0.3
794,560 + IAI46_03650 0.83 +0.0
794,561 - IAI46_03650 0.83 +0.1
794,561 - IAI46_03650 0.83 +0.6
794,700 + -0.7
794,701 - -1.1
794,701 - -0.8
794,701 - +0.6
794,726 + +1.4
794,726 + +0.4
794,775 - +0.1
794,775 - +0.6
794,778 - +0.4
794,778 - +0.4
794,817 + +1.7
794,834 + +0.4
794,834 + +0.9
794,835 - +0.0
794,835 - +1.6
794,873 + +0.7
794,928 + IAI46_03655 0.11 +1.0
794,928 + IAI46_03655 0.11 +0.3
794,928 + IAI46_03655 0.11 -0.1
794,928 + IAI46_03655 0.11 -0.8
794,932 + IAI46_03655 0.11 +0.4
794,933 - IAI46_03655 0.12 -0.1
795,082 - IAI46_03655 0.22 -1.9
795,104 + IAI46_03655 0.24 +0.1
795,105 - IAI46_03655 0.24 -0.2
795,224 + IAI46_03655 0.33 -1.5
795,224 + IAI46_03655 0.33 -0.3
795,224 + IAI46_03655 0.33 +1.6
795,225 - IAI46_03655 0.33 -0.1
795,225 - IAI46_03655 0.33 -0.2
795,380 + IAI46_03655 0.44 +0.3
795,380 + IAI46_03655 0.44 +0.7
795,381 - IAI46_03655 0.44 +0.0
795,413 + IAI46_03655 0.46 +1.3
795,413 + IAI46_03655 0.46 -0.0
795,414 - IAI46_03655 0.46 +0.4
795,573 + IAI46_03655 0.58 +0.1
795,813 + IAI46_03655 0.75 +0.2
795,815 + IAI46_03655 0.75 -0.2
795,815 + IAI46_03655 0.75 +0.9
795,815 + IAI46_03655 0.75 +0.3
795,815 + IAI46_03655 0.75 -0.5
795,815 + IAI46_03655 0.75 +0.0
795,815 + IAI46_03655 0.75 +0.1
795,815 + IAI46_03655 0.75 +0.7
795,815 + IAI46_03655 0.75 -0.8
795,816 - IAI46_03655 0.75 -0.8
795,816 - IAI46_03655 0.75 +0.8
795,816 - IAI46_03655 0.75 +0.0
795,816 - IAI46_03655 0.75 +0.8
795,816 - IAI46_03655 0.75 +0.1
795,816 - IAI46_03655 0.75 +0.1
795,816 - IAI46_03655 0.75 +0.7
795,816 - IAI46_03655 0.75 +0.1
795,867 + IAI46_03655 0.79 +0.5
795,868 - IAI46_03655 0.79 +0.2
795,869 + IAI46_03655 0.79 +0.0
795,869 + IAI46_03655 0.79 +0.3
795,870 - IAI46_03655 0.79 -0.8
795,870 - IAI46_03655 0.79 +0.4
795,870 - IAI46_03655 0.79 +1.1
795,908 + IAI46_03655 0.82 +0.0
795,909 - IAI46_03655 0.82 +0.7
795,909 - IAI46_03655 0.82 +0.6
795,920 + IAI46_03655 0.83 +1.1
795,921 - IAI46_03655 0.83 -1.9
795,921 - IAI46_03655 0.83 +0.5
795,984 + IAI46_03655 0.88 -0.1
796,062 - +1.2
796,062 - +1.8
796,099 - -0.2
796,099 - +0.9
796,120 + +0.3
796,121 - +0.1
796,149 + -0.2
796,246 + +0.5
796,253 + +0.2
796,258 - +0.6
796,267 + +0.4
796,365 + +0.3
796,365 + -0.2
796,365 + -0.2
796,365 + -0.4
796,365 + -0.0
796,366 - +0.3
796,368 + -0.8
796,368 + +0.5
796,369 - +2.6
796,631 - IAI46_03660 0.24 +1.1
796,646 - IAI46_03660 0.25 +0.3
796,723 + IAI46_03660 0.30 +0.8
796,842 - IAI46_03660 0.38 +0.5
796,950 + IAI46_03660 0.45 +0.2
796,961 + IAI46_03660 0.46 +0.6
797,061 - IAI46_03660 0.52 -0.2
797,071 + IAI46_03660 0.53 +1.3
797,071 + IAI46_03660 0.53 -0.8

Or see this region's nucleotide sequence