Strain Fitness in Serratia liquefaciens MT49 around IAI46_03395

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03390 and IAI46_03395 are separated by 869 nucleotidesIAI46_03395 and IAI46_03400 are separated by 2 nucleotidesIAI46_03400 and IAI46_03405 overlap by 4 nucleotides IAI46_03390: IAI46_03390 - L-alanine exporter AlaE, at 734,496 to 734,936 _03390 IAI46_03395: IAI46_03395 - division/cell wall cluster transcriptional repressor MraZ, at 735,806 to 736,264 _03395 IAI46_03400: IAI46_03400 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 736,267 to 737,208 _03400 IAI46_03405: IAI46_03405 - cell division protein FtsL, at 737,205 to 737,525 _03405 Position (kb) 735 736 737Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 734.875 kb on + strand, within IAI46_03390at 734.875 kb on + strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.925 kb on - strandat 735.019 kb on - strandat 735.019 kb on - strandat 735.045 kb on + strandat 735.045 kb on + strandat 735.045 kb on + strandat 735.049 kb on + strandat 735.049 kb on + strandat 735.050 kb on - strandat 735.050 kb on - strandat 735.050 kb on - strandat 735.054 kb on + strandat 735.054 kb on + strandat 735.054 kb on + strandat 735.220 kb on - strandat 735.220 kb on - strandat 735.227 kb on + strandat 735.227 kb on + strandat 735.228 kb on - strandat 735.228 kb on - strandat 735.244 kb on - strandat 735.244 kb on - strandat 735.268 kb on + strandat 735.268 kb on + strandat 735.311 kb on - strandat 735.311 kb on - strandat 735.358 kb on - strandat 735.358 kb on - strandat 735.358 kb on - strandat 735.366 kb on + strandat 735.366 kb on + strandat 735.367 kb on - strandat 735.371 kb on + strandat 735.403 kb on - strandat 735.403 kb on - strandat 735.408 kb on - strandat 735.423 kb on + strandat 735.442 kb on - strandat 735.541 kb on + strandat 735.541 kb on + strandat 735.542 kb on - strandat 735.550 kb on - strandat 735.639 kb on + strandat 735.639 kb on + strandat 735.640 kb on - strandat 735.642 kb on + strandat 735.647 kb on - strandat 735.749 kb on + strandat 735.749 kb on + strandat 735.805 kb on + strandat 736.000 kb on + strand, within IAI46_03395at 736.093 kb on + strand, within IAI46_03395at 736.093 kb on + strand, within IAI46_03395at 736.117 kb on + strand, within IAI46_03395at 736.201 kb on + strand, within IAI46_03395at 736.201 kb on + strand, within IAI46_03395at 736.490 kb on + strand, within IAI46_03400

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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734,875 + IAI46_03390 0.86 -1.1
734,875 + IAI46_03390 0.86 -1.0
734,876 - IAI46_03390 0.86 +0.5
734,876 - IAI46_03390 0.86 +0.1
734,876 - IAI46_03390 0.86 +0.2
734,876 - IAI46_03390 0.86 -0.6
734,925 - -0.6
735,019 - +2.2
735,019 - +0.4
735,045 + +1.4
735,045 + +0.3
735,045 + -1.1
735,049 + -0.2
735,049 + -0.3
735,050 - +0.5
735,050 - +0.1
735,050 - +0.4
735,054 + -0.3
735,054 + -0.4
735,054 + +1.3
735,220 - -0.3
735,220 - -0.9
735,227 + -0.0
735,227 + +0.1
735,228 - +0.2
735,228 - +0.8
735,244 - +3.8
735,244 - -1.1
735,268 + +0.8
735,268 + +0.5
735,311 - +1.0
735,311 - +0.9
735,358 - -1.1
735,358 - +0.5
735,358 - +0.1
735,366 + -1.4
735,366 + -1.7
735,367 - +0.0
735,371 + -0.3
735,403 - +0.1
735,403 - -1.3
735,408 - -0.6
735,423 + -0.3
735,442 - -0.2
735,541 + +0.8
735,541 + +1.5
735,542 - +0.2
735,550 - +0.1
735,639 + -1.9
735,639 + -1.0
735,640 - +0.1
735,642 + +0.6
735,647 - -1.7
735,749 + -0.4
735,749 + -0.3
735,805 + +0.3
736,000 + IAI46_03395 0.42 -0.3
736,093 + IAI46_03395 0.63 +0.6
736,093 + IAI46_03395 0.63 -0.1
736,117 + IAI46_03395 0.68 +0.3
736,201 + IAI46_03395 0.86 -0.0
736,201 + IAI46_03395 0.86 +0.1
736,490 + IAI46_03400 0.24 -0.8

Or see this region's nucleotide sequence