Strain Fitness in Serratia liquefaciens MT49 around IAI46_02045

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02040 and IAI46_02045 are separated by 269 nucleotidesIAI46_02045 and IAI46_02050 are separated by 432 nucleotidesIAI46_02050 and IAI46_02055 are separated by 47 nucleotides IAI46_02040: IAI46_02040 - ornithine decarboxylase SpeF, at 436,264 to 438,426 _02040 IAI46_02045: IAI46_02045 - DUF2618 domain-containing protein, at 438,696 to 438,800 _02045 IAI46_02050: IAI46_02050 - YhbP family protein, at 439,233 to 439,667 _02050 IAI46_02055: IAI46_02055 - NAD(P)H-binding protein, at 439,715 to 440,353 _02055 Position (kb) 438 439Strain fitness (log2 ratio) -2 -1 0 1at 437.705 kb on + strand, within IAI46_02040at 437.755 kb on - strand, within IAI46_02040at 437.761 kb on - strand, within IAI46_02040at 437.761 kb on - strand, within IAI46_02040at 437.763 kb on + strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.779 kb on + strand, within IAI46_02040at 437.779 kb on + strand, within IAI46_02040at 437.795 kb on - strand, within IAI46_02040at 437.849 kb on + strand, within IAI46_02040at 437.850 kb on - strand, within IAI46_02040at 437.856 kb on + strand, within IAI46_02040at 437.920 kb on + strand, within IAI46_02040at 437.920 kb on + strand, within IAI46_02040at 437.921 kb on - strand, within IAI46_02040at 437.952 kb on + strand, within IAI46_02040at 437.953 kb on - strand, within IAI46_02040at 437.981 kb on - strand, within IAI46_02040at 438.074 kb on + strand, within IAI46_02040at 438.185 kb on - strand, within IAI46_02040at 438.206 kb on - strand, within IAI46_02040at 438.206 kb on - strand, within IAI46_02040at 438.483 kb on + strandat 438.483 kb on + strandat 438.492 kb on - strandat 438.505 kb on - strandat 438.550 kb on - strandat 438.586 kb on + strandat 438.606 kb on - strandat 438.697 kb on + strandat 438.722 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.770 kb on + strand, within IAI46_02045at 438.771 kb on - strand, within IAI46_02045at 438.805 kb on - strandat 438.805 kb on - strandat 438.869 kb on + strandat 438.869 kb on + strandat 438.880 kb on + strandat 438.903 kb on - strandat 438.921 kb on + strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.935 kb on + strandat 438.942 kb on - strandat 438.952 kb on + strandat 438.952 kb on + strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.964 kb on + strandat 438.980 kb on - strandat 439.049 kb on + strandat 439.050 kb on - strandat 439.051 kb on + strandat 439.052 kb on - strandat 439.052 kb on - strandat 439.088 kb on - strandat 439.089 kb on + strandat 439.096 kb on - strandat 439.096 kb on - strandat 439.239 kb on - strandat 439.259 kb on + strandat 439.260 kb on - strandat 439.260 kb on - strandat 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.342 kb on - strand, within IAI46_02050at 439.547 kb on + strand, within IAI46_02050at 439.548 kb on - strand, within IAI46_02050at 439.626 kb on - strandat 439.680 kb on - strandat 439.714 kb on + strandat 439.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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437,705 + IAI46_02040 0.67 -0.0
437,755 - IAI46_02040 0.69 +0.2
437,761 - IAI46_02040 0.69 +0.3
437,761 - IAI46_02040 0.69 -2.0
437,763 + IAI46_02040 0.69 +0.3
437,764 - IAI46_02040 0.69 +0.2
437,764 - IAI46_02040 0.69 +0.2
437,764 - IAI46_02040 0.69 -1.1
437,779 + IAI46_02040 0.70 +0.2
437,779 + IAI46_02040 0.70 -0.4
437,795 - IAI46_02040 0.71 -0.2
437,849 + IAI46_02040 0.73 +0.6
437,850 - IAI46_02040 0.73 -0.1
437,856 + IAI46_02040 0.74 +1.3
437,920 + IAI46_02040 0.77 +0.1
437,920 + IAI46_02040 0.77 +0.0
437,921 - IAI46_02040 0.77 +0.4
437,952 + IAI46_02040 0.78 +0.2
437,953 - IAI46_02040 0.78 +0.9
437,981 - IAI46_02040 0.79 +0.6
438,074 + IAI46_02040 0.84 -0.6
438,185 - IAI46_02040 0.89 +0.8
438,206 - IAI46_02040 0.90 +0.2
438,206 - IAI46_02040 0.90 -0.9
438,483 + -0.6
438,483 + -0.4
438,492 - -0.7
438,505 - +0.3
438,550 - -0.9
438,586 + +1.1
438,606 - +0.4
438,697 + +0.2
438,722 + IAI46_02045 0.25 +0.2
438,749 + IAI46_02045 0.50 +0.4
438,749 + IAI46_02045 0.50 +0.4
438,750 - IAI46_02045 0.51 +0.9
438,750 - IAI46_02045 0.51 +0.1
438,750 - IAI46_02045 0.51 -0.5
438,770 + IAI46_02045 0.70 +0.4
438,771 - IAI46_02045 0.71 +1.6
438,805 - +0.2
438,805 - -0.4
438,869 + -1.3
438,869 + -0.5
438,880 + +0.3
438,903 - +0.0
438,921 + +0.0
438,922 - +0.4
438,922 - -0.1
438,922 - +0.8
438,935 + +1.2
438,942 - -0.4
438,952 + -0.3
438,952 + +0.7
438,953 - -0.4
438,953 - +0.3
438,953 - -0.3
438,964 + +0.6
438,980 - -0.9
439,049 + -0.2
439,050 - -1.0
439,051 + -0.7
439,052 - +0.4
439,052 - +0.5
439,088 - -0.7
439,089 + -0.9
439,096 - +0.5
439,096 - -0.4
439,239 - +0.6
439,259 + +0.2
439,260 - +0.6
439,260 - +0.3
439,288 + IAI46_02050 0.13 +0.3
439,288 + IAI46_02050 0.13 +0.6
439,288 + IAI46_02050 0.13 +0.5
439,319 + IAI46_02050 0.20 +1.0
439,319 + IAI46_02050 0.20 +0.7
439,319 + IAI46_02050 0.20 +0.9
439,320 - IAI46_02050 0.20 -0.1
439,320 - IAI46_02050 0.20 +1.3
439,320 - IAI46_02050 0.20 +0.4
439,342 - IAI46_02050 0.25 -0.3
439,547 + IAI46_02050 0.72 +1.2
439,548 - IAI46_02050 0.72 +0.9
439,626 - +0.5
439,680 - +0.2
439,714 + -0.6
439,715 - +0.4

Or see this region's nucleotide sequence