Strain Fitness in Serratia liquefaciens MT49 around IAI46_00855

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00850 and IAI46_00855 are separated by 174 nucleotidesIAI46_00855 and IAI46_00860 are separated by 662 nucleotides IAI46_00850: IAI46_00850 - hypothetical protein, at 191,860 to 192,927 _00850 IAI46_00855: IAI46_00855 - zinc/cadmium/mercury/lead-transporting ATPase, at 193,102 to 195,417 _00855 IAI46_00860: IAI46_00860 - M10 family metallopeptidase, at 196,080 to 197,543 _00860 Position (kb) 193 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 192.107 kb on + strand, within IAI46_00850at 192.107 kb on + strand, within IAI46_00850at 192.107 kb on + strand, within IAI46_00850at 192.107 kb on + strand, within IAI46_00850at 192.107 kb on + strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.108 kb on - strand, within IAI46_00850at 192.150 kb on + strand, within IAI46_00850at 192.239 kb on + strand, within IAI46_00850at 192.239 kb on + strand, within IAI46_00850at 192.309 kb on + strand, within IAI46_00850at 192.310 kb on - strand, within IAI46_00850at 192.316 kb on - strand, within IAI46_00850at 192.327 kb on + strand, within IAI46_00850at 192.327 kb on + strand, within IAI46_00850at 192.450 kb on + strand, within IAI46_00850at 192.450 kb on + strand, within IAI46_00850at 192.450 kb on + strand, within IAI46_00850at 192.450 kb on + strand, within IAI46_00850at 192.451 kb on - strand, within IAI46_00850at 192.476 kb on + strand, within IAI46_00850at 192.476 kb on + strand, within IAI46_00850at 192.477 kb on - strand, within IAI46_00850at 192.615 kb on + strand, within IAI46_00850at 192.631 kb on - strand, within IAI46_00850at 192.650 kb on + strand, within IAI46_00850at 192.651 kb on - strand, within IAI46_00850at 192.651 kb on - strand, within IAI46_00850at 192.651 kb on - strand, within IAI46_00850at 192.687 kb on - strand, within IAI46_00850at 192.687 kb on - strand, within IAI46_00850at 192.687 kb on - strand, within IAI46_00850at 192.765 kb on + strand, within IAI46_00850at 192.766 kb on - strand, within IAI46_00850at 192.766 kb on - strand, within IAI46_00850at 192.874 kb on - strandat 192.880 kb on - strandat 192.880 kb on - strandat 192.948 kb on + strandat 192.949 kb on - strandat 192.953 kb on + strandat 192.953 kb on + strandat 192.954 kb on - strandat 192.954 kb on - strandat 192.954 kb on - strandat 192.954 kb on - strandat 192.957 kb on + strandat 192.957 kb on + strandat 192.957 kb on + strandat 192.958 kb on - strandat 192.958 kb on - strandat 192.979 kb on + strandat 192.994 kb on + strandat 192.994 kb on + strandat 192.995 kb on - strandat 192.996 kb on + strandat 192.996 kb on + strandat 192.996 kb on + strandat 192.997 kb on - strandat 192.997 kb on - strandat 193.021 kb on + strandat 193.024 kb on + strandat 193.024 kb on + strandat 193.024 kb on + strandat 193.101 kb on - strandat 193.104 kb on - strandat 193.104 kb on - strandat 193.219 kb on + strandat 193.476 kb on + strand, within IAI46_00855at 193.476 kb on + strand, within IAI46_00855at 193.477 kb on - strand, within IAI46_00855at 193.477 kb on - strand, within IAI46_00855at 193.502 kb on + strand, within IAI46_00855at 193.502 kb on + strand, within IAI46_00855at 193.564 kb on + strand, within IAI46_00855at 193.627 kb on - strand, within IAI46_00855at 193.669 kb on + strand, within IAI46_00855at 193.670 kb on - strand, within IAI46_00855at 193.670 kb on - strand, within IAI46_00855at 193.675 kb on + strand, within IAI46_00855at 193.676 kb on - strand, within IAI46_00855at 193.676 kb on - strand, within IAI46_00855at 193.676 kb on - strand, within IAI46_00855at 193.761 kb on + strand, within IAI46_00855at 193.762 kb on - strand, within IAI46_00855at 193.762 kb on - strand, within IAI46_00855at 193.780 kb on - strand, within IAI46_00855at 193.853 kb on + strand, within IAI46_00855at 193.853 kb on + strand, within IAI46_00855at 193.854 kb on - strand, within IAI46_00855at 194.026 kb on + strand, within IAI46_00855at 194.061 kb on + strand, within IAI46_00855at 194.061 kb on + strand, within IAI46_00855at 194.061 kb on + strand, within IAI46_00855at 194.061 kb on + strand, within IAI46_00855at 194.062 kb on - strand, within IAI46_00855at 194.062 kb on - strand, within IAI46_00855at 194.103 kb on + strand, within IAI46_00855at 194.103 kb on + strand, within IAI46_00855at 194.104 kb on - strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.198 kb on + strand, within IAI46_00855at 194.199 kb on - strand, within IAI46_00855at 194.199 kb on - strand, within IAI46_00855at 194.199 kb on - strand, within IAI46_00855at 194.199 kb on - strand, within IAI46_00855at 194.199 kb on - strand, within IAI46_00855at 194.241 kb on + strand, within IAI46_00855at 194.241 kb on + strand, within IAI46_00855at 194.255 kb on + strand, within IAI46_00855at 194.255 kb on + strand, within IAI46_00855at 194.255 kb on + strand, within IAI46_00855at 194.255 kb on + strand, within IAI46_00855at 194.256 kb on - strand, within IAI46_00855at 194.256 kb on - strand, within IAI46_00855at 194.256 kb on - strand, within IAI46_00855at 194.258 kb on + strand, within IAI46_00855at 194.258 kb on + strand, within IAI46_00855at 194.259 kb on - strand, within IAI46_00855at 194.329 kb on + strand, within IAI46_00855at 194.329 kb on + strand, within IAI46_00855at 194.329 kb on + strand, within IAI46_00855at 194.329 kb on + strand, within IAI46_00855at 194.329 kb on + strand, within IAI46_00855at 194.330 kb on - strand, within IAI46_00855at 194.330 kb on - strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.331 kb on + strand, within IAI46_00855at 194.332 kb on - strand, within IAI46_00855at 194.574 kb on + strand, within IAI46_00855at 194.800 kb on + strand, within IAI46_00855at 195.034 kb on - strand, within IAI46_00855at 195.053 kb on - strand, within IAI46_00855at 195.076 kb on + strand, within IAI46_00855at 195.077 kb on - strand, within IAI46_00855at 195.091 kb on + strand, within IAI46_00855at 195.092 kb on - strand, within IAI46_00855at 195.154 kb on - strand, within IAI46_00855at 195.174 kb on - strand, within IAI46_00855at 195.381 kb on + strandat 195.382 kb on - strandat 195.382 kb on - strandat 195.382 kb on - strandat 195.411 kb on + strandat 195.412 kb on - strandat 195.412 kb on - strandat 195.412 kb on - strandat 195.417 kb on + strandat 195.417 kb on + strandat 195.418 kb on - strandat 195.418 kb on - strandat 195.439 kb on + strandat 195.439 kb on + strandat 195.439 kb on + strandat 195.464 kb on - strandat 195.506 kb on + strandat 195.507 kb on - strandat 195.541 kb on - strandat 195.541 kb on - strandat 195.563 kb on + strandat 195.656 kb on - strandat 195.658 kb on + strandat 195.659 kb on - strandat 195.667 kb on - strandat 195.667 kb on - strandat 195.669 kb on + strandat 195.669 kb on + strandat 195.670 kb on - strandat 195.684 kb on + strandat 195.781 kb on + strandat 195.792 kb on - strandat 195.795 kb on - strandat 195.799 kb on + strandat 195.799 kb on + strandat 195.843 kb on + strandat 195.843 kb on + strandat 195.843 kb on + strandat 195.844 kb on - strandat 195.844 kb on - strandat 195.875 kb on - strandat 195.884 kb on + strandat 195.921 kb on + strandat 195.922 kb on - strandat 195.933 kb on + strandat 195.933 kb on + strandat 195.934 kb on - strandat 195.934 kb on - strandat 195.934 kb on - strandat 195.934 kb on - strandat 195.934 kb on - strandat 195.953 kb on - strandat 195.996 kb on + strandat 195.997 kb on - strandat 195.997 kb on - strandat 196.028 kb on + strandat 196.029 kb on - strandat 196.029 kb on - strandat 196.034 kb on + strandat 196.034 kb on + strandat 196.034 kb on + strandat 196.060 kb on + strandat 196.060 kb on + strandat 196.091 kb on + strandat 196.144 kb on - strandat 196.153 kb on + strandat 196.154 kb on - strandat 196.170 kb on + strandat 196.171 kb on - strandat 196.171 kb on - strandat 196.199 kb on + strandat 196.241 kb on + strand, within IAI46_00860at 196.241 kb on + strand, within IAI46_00860at 196.274 kb on + strand, within IAI46_00860at 196.300 kb on + strand, within IAI46_00860at 196.323 kb on - strand, within IAI46_00860at 196.395 kb on - strand, within IAI46_00860at 196.395 kb on - strand, within IAI46_00860

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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192,107 + IAI46_00850 0.23 -0.8
192,107 + IAI46_00850 0.23 +0.2
192,107 + IAI46_00850 0.23 +0.2
192,107 + IAI46_00850 0.23 +0.2
192,107 + IAI46_00850 0.23 -0.1
192,108 - IAI46_00850 0.23 +0.5
192,108 - IAI46_00850 0.23 +0.0
192,108 - IAI46_00850 0.23 +0.8
192,108 - IAI46_00850 0.23 +0.3
192,108 - IAI46_00850 0.23 -1.2
192,108 - IAI46_00850 0.23 -0.1
192,108 - IAI46_00850 0.23 +0.3
192,108 - IAI46_00850 0.23 -0.5
192,108 - IAI46_00850 0.23 -0.4
192,150 + IAI46_00850 0.27 +0.6
192,239 + IAI46_00850 0.35 +0.1
192,239 + IAI46_00850 0.35 -0.2
192,309 + IAI46_00850 0.42 +0.8
192,310 - IAI46_00850 0.42 -0.2
192,316 - IAI46_00850 0.43 -0.2
192,327 + IAI46_00850 0.44 +0.3
192,327 + IAI46_00850 0.44 +0.5
192,450 + IAI46_00850 0.55 +1.4
192,450 + IAI46_00850 0.55 -0.7
192,450 + IAI46_00850 0.55 -0.3
192,450 + IAI46_00850 0.55 -1.0
192,451 - IAI46_00850 0.55 +0.1
192,476 + IAI46_00850 0.58 +0.5
192,476 + IAI46_00850 0.58 +0.3
192,477 - IAI46_00850 0.58 -0.5
192,615 + IAI46_00850 0.71 +0.3
192,631 - IAI46_00850 0.72 +0.4
192,650 + IAI46_00850 0.74 +0.7
192,651 - IAI46_00850 0.74 +0.2
192,651 - IAI46_00850 0.74 +1.0
192,651 - IAI46_00850 0.74 -0.5
192,687 - IAI46_00850 0.77 -1.8
192,687 - IAI46_00850 0.77 -1.2
192,687 - IAI46_00850 0.77 +0.4
192,765 + IAI46_00850 0.85 -0.2
192,766 - IAI46_00850 0.85 -1.7
192,766 - IAI46_00850 0.85 +0.6
192,874 - -0.3
192,880 - +0.5
192,880 - +0.9
192,948 + +0.3
192,949 - +0.3
192,953 + -0.8
192,953 + -0.3
192,954 - +0.7
192,954 - +0.8
192,954 - -0.5
192,954 - +0.3
192,957 + +0.3
192,957 + -0.4
192,957 + +0.3
192,958 - +0.1
192,958 - -0.1
192,979 + +0.0
192,994 + +1.3
192,994 + +0.4
192,995 - -0.1
192,996 + +0.3
192,996 + +0.0
192,996 + +0.2
192,997 - +0.4
192,997 - -0.3
193,021 + -0.2
193,024 + -0.1
193,024 + -0.0
193,024 + +0.7
193,101 - -0.6
193,104 - +1.1
193,104 - +1.0
193,219 + -0.4
193,476 + IAI46_00855 0.16 +0.8
193,476 + IAI46_00855 0.16 +0.2
193,477 - IAI46_00855 0.16 +0.2
193,477 - IAI46_00855 0.16 +0.7
193,502 + IAI46_00855 0.17 -0.7
193,502 + IAI46_00855 0.17 +2.2
193,564 + IAI46_00855 0.20 +0.2
193,627 - IAI46_00855 0.23 +0.1
193,669 + IAI46_00855 0.24 +1.9
193,670 - IAI46_00855 0.25 +0.6
193,670 - IAI46_00855 0.25 +0.3
193,675 + IAI46_00855 0.25 +0.5
193,676 - IAI46_00855 0.25 +0.4
193,676 - IAI46_00855 0.25 +0.2
193,676 - IAI46_00855 0.25 -1.7
193,761 + IAI46_00855 0.28 -0.2
193,762 - IAI46_00855 0.28 -0.2
193,762 - IAI46_00855 0.28 +0.2
193,780 - IAI46_00855 0.29 -0.3
193,853 + IAI46_00855 0.32 -0.4
193,853 + IAI46_00855 0.32 -0.0
193,854 - IAI46_00855 0.32 -0.4
194,026 + IAI46_00855 0.40 +0.4
194,061 + IAI46_00855 0.41 +0.3
194,061 + IAI46_00855 0.41 +0.1
194,061 + IAI46_00855 0.41 -0.1
194,061 + IAI46_00855 0.41 -0.7
194,062 - IAI46_00855 0.41 +0.7
194,062 - IAI46_00855 0.41 -1.7
194,103 + IAI46_00855 0.43 -1.5
194,103 + IAI46_00855 0.43 -0.7
194,104 - IAI46_00855 0.43 -0.3
194,198 + IAI46_00855 0.47 -0.1
194,198 + IAI46_00855 0.47 +0.3
194,198 + IAI46_00855 0.47 +0.6
194,198 + IAI46_00855 0.47 -0.3
194,198 + IAI46_00855 0.47 +0.7
194,198 + IAI46_00855 0.47 -0.9
194,198 + IAI46_00855 0.47 -0.6
194,199 - IAI46_00855 0.47 +0.6
194,199 - IAI46_00855 0.47 +0.4
194,199 - IAI46_00855 0.47 +1.2
194,199 - IAI46_00855 0.47 -0.7
194,199 - IAI46_00855 0.47 +0.2
194,241 + IAI46_00855 0.49 +0.9
194,241 + IAI46_00855 0.49 -0.2
194,255 + IAI46_00855 0.50 -0.5
194,255 + IAI46_00855 0.50 +0.8
194,255 + IAI46_00855 0.50 +1.1
194,255 + IAI46_00855 0.50 -0.0
194,256 - IAI46_00855 0.50 +0.0
194,256 - IAI46_00855 0.50 -0.5
194,256 - IAI46_00855 0.50 +0.1
194,258 + IAI46_00855 0.50 +1.0
194,258 + IAI46_00855 0.50 +1.2
194,259 - IAI46_00855 0.50 -0.2
194,329 + IAI46_00855 0.53 +0.3
194,329 + IAI46_00855 0.53 -0.2
194,329 + IAI46_00855 0.53 +0.0
194,329 + IAI46_00855 0.53 +0.4
194,329 + IAI46_00855 0.53 -0.3
194,330 - IAI46_00855 0.53 -0.4
194,330 - IAI46_00855 0.53 -1.0
194,331 + IAI46_00855 0.53 +0.6
194,331 + IAI46_00855 0.53 +0.1
194,331 + IAI46_00855 0.53 +0.8
194,331 + IAI46_00855 0.53 -1.5
194,331 + IAI46_00855 0.53 -0.2
194,331 + IAI46_00855 0.53 +0.4
194,332 - IAI46_00855 0.53 +0.3
194,574 + IAI46_00855 0.64 +0.4
194,800 + IAI46_00855 0.73 +0.2
195,034 - IAI46_00855 0.83 -0.3
195,053 - IAI46_00855 0.84 +1.1
195,076 + IAI46_00855 0.85 +0.5
195,077 - IAI46_00855 0.85 +0.0
195,091 + IAI46_00855 0.86 +0.5
195,092 - IAI46_00855 0.86 +0.5
195,154 - IAI46_00855 0.89 +0.4
195,174 - IAI46_00855 0.89 -0.2
195,381 + +1.2
195,382 - -0.1
195,382 - -0.2
195,382 - +0.5
195,411 + +0.1
195,412 - -1.0
195,412 - +0.3
195,412 - +1.1
195,417 + +0.5
195,417 + +1.1
195,418 - -0.2
195,418 - -0.1
195,439 + +0.9
195,439 + +0.3
195,439 + +0.3
195,464 - +0.6
195,506 + +0.7
195,507 - -0.5
195,541 - -0.1
195,541 - +1.0
195,563 + -1.7
195,656 - +1.2
195,658 + -1.3
195,659 - +0.7
195,667 - +0.1
195,667 - -0.0
195,669 + -0.3
195,669 + -0.5
195,670 - +0.8
195,684 + -0.1
195,781 + +0.9
195,792 - -0.3
195,795 - -0.2
195,799 + +0.0
195,799 + -0.3
195,843 + +0.4
195,843 + +2.1
195,843 + -0.2
195,844 - -0.7
195,844 - +1.0
195,875 - +1.0
195,884 + -0.1
195,921 + -0.2
195,922 - +0.9
195,933 + +0.0
195,933 + +0.9
195,934 - -0.0
195,934 - +0.4
195,934 - +0.8
195,934 - +0.0
195,934 - +1.4
195,953 - +0.5
195,996 + +0.6
195,997 - +0.4
195,997 - +0.6
196,028 + +0.5
196,029 - +0.5
196,029 - +0.0
196,034 + -0.8
196,034 + +0.2
196,034 + -0.4
196,060 + +0.1
196,060 + -0.5
196,091 + +0.6
196,144 - +0.2
196,153 + +1.4
196,154 - -0.4
196,170 + +0.4
196,171 - +0.3
196,171 - +0.6
196,199 + +1.1
196,241 + IAI46_00860 0.11 +1.3
196,241 + IAI46_00860 0.11 -0.1
196,274 + IAI46_00860 0.13 -0.0
196,300 + IAI46_00860 0.15 +0.4
196,323 - IAI46_00860 0.17 +0.9
196,395 - IAI46_00860 0.22 +0.3
196,395 - IAI46_00860 0.22 +0.9

Or see this region's nucleotide sequence