Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00615 and IAI46_00620 overlap by 23 nucleotides IAI46_00620 and IAI46_00625 overlap by 14 nucleotides IAI46_00625 and IAI46_00630 are separated by 1 nucleotides
IAI46_00615: IAI46_00615 - glucose-1-phosphate thymidylyltransferase RfbA, at 145,938 to 146,819
_00615
IAI46_00620: IAI46_00620 - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 146,797 to 147,528
_00620
IAI46_00625: IAI46_00625 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 147,515 to 148,645
_00625
IAI46_00630: IAI46_00630 - lipid III flippase WzxE, at 148,647 to 149,897
_00630
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.529 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.676 kb on - strand, within IAI46_00615 at 146.779 kb on - strand at 146.779 kb on - strand at 146.779 kb on - strand at 146.791 kb on + strand at 146.792 kb on - strand at 146.825 kb on + strand at 146.826 kb on - strand at 146.918 kb on - strand, within IAI46_00620 at 146.918 kb on - strand, within IAI46_00620 at 146.934 kb on + strand, within IAI46_00620 at 147.093 kb on + strand, within IAI46_00620 at 147.094 kb on - strand, within IAI46_00620 at 147.094 kb on - strand, within IAI46_00620 at 147.101 kb on + strand, within IAI46_00620 at 147.157 kb on + strand, within IAI46_00620 at 147.157 kb on + strand, within IAI46_00620 at 147.185 kb on - strand, within IAI46_00620 at 147.307 kb on - strand, within IAI46_00620 at 147.345 kb on + strand, within IAI46_00620 at 147.346 kb on - strand, within IAI46_00620 at 147.351 kb on + strand, within IAI46_00620 at 147.351 kb on + strand, within IAI46_00620 at 147.352 kb on - strand, within IAI46_00620 at 147.352 kb on - strand, within IAI46_00620 at 147.352 kb on - strand, within IAI46_00620 at 147.449 kb on + strand, within IAI46_00620 at 147.502 kb on + strand at 147.502 kb on + strand at 147.502 kb on + strand at 147.502 kb on + strand at 147.503 kb on - strand at 147.526 kb on + strand at 147.526 kb on + strand at 147.527 kb on - strand at 147.560 kb on + strand at 147.560 kb on + strand at 147.561 kb on - strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.562 kb on + strand at 147.563 kb on - strand at 147.563 kb on - strand at 147.563 kb on - strand at 147.611 kb on - strand at 147.611 kb on - strand at 147.963 kb on + strand, within IAI46_00625 at 147.964 kb on - strand, within IAI46_00625 at 147.995 kb on + strand, within IAI46_00625 at 147.995 kb on + strand, within IAI46_00625 at 147.996 kb on - strand, within IAI46_00625 at 147.996 kb on - strand, within IAI46_00625 at 147.996 kb on - strand, within IAI46_00625 at 148.027 kb on + strand, within IAI46_00625 at 148.039 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.184 kb on + strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.185 kb on - strand, within IAI46_00625 at 148.186 kb on + strand, within IAI46_00625 at 148.186 kb on + strand, within IAI46_00625 at 148.186 kb on + strand, within IAI46_00625 at 148.186 kb on + strand, within IAI46_00625 at 148.187 kb on - strand, within IAI46_00625 at 148.187 kb on - strand, within IAI46_00625 at 148.211 kb on + strand, within IAI46_00625 at 148.212 kb on - strand, within IAI46_00625 at 148.239 kb on - strand, within IAI46_00625 at 148.304 kb on + strand, within IAI46_00625 at 148.304 kb on + strand, within IAI46_00625 at 148.304 kb on + strand, within IAI46_00625 at 148.304 kb on + strand, within IAI46_00625 at 148.304 kb on + strand, within IAI46_00625 at 148.305 kb on - strand, within IAI46_00625 at 148.307 kb on + strand, within IAI46_00625 at 148.307 kb on + strand, within IAI46_00625 at 148.308 kb on - strand, within IAI46_00625 at 148.379 kb on - strand, within IAI46_00625 at 148.394 kb on + strand, within IAI46_00625 at 148.395 kb on - strand, within IAI46_00625 at 148.395 kb on - strand, within IAI46_00625 at 148.411 kb on + strand, within IAI46_00625 at 148.583 kb on + strand at 148.583 kb on + strand at 148.583 kb on + strand at 148.584 kb on - strand at 148.588 kb on + strand at 148.588 kb on + strand at 148.589 kb on - strand at 148.589 kb on - strand at 148.609 kb on + strand at 148.610 kb on - strand at 148.610 kb on - strand at 148.610 kb on - strand at 148.621 kb on + strand at 148.622 kb on - strand at 148.630 kb on + strand at 148.630 kb on + strand at 148.630 kb on + strand at 148.631 kb on - strand at 148.646 kb on + strand at 148.646 kb on + strand at 148.646 kb on + strand at 148.787 kb on + strand, within IAI46_00630 at 148.839 kb on + strand, within IAI46_00630 at 148.840 kb on - strand, within IAI46_00630 at 148.840 kb on - strand, within IAI46_00630 at 148.840 kb on - strand, within IAI46_00630 at 148.843 kb on + strand, within IAI46_00630 at 148.844 kb on - strand, within IAI46_00630 at 148.844 kb on - strand, within IAI46_00630 at 148.844 kb on - strand, within IAI46_00630 at 148.852 kb on - strand, within IAI46_00630 at 148.959 kb on - strand, within IAI46_00630 at 148.959 kb on - strand, within IAI46_00630 at 148.959 kb on - strand, within IAI46_00630 at 148.989 kb on + strand, within IAI46_00630 at 148.990 kb on - strand, within IAI46_00630 at 149.018 kb on + strand, within IAI46_00630 at 149.019 kb on - strand, within IAI46_00630 at 149.051 kb on + strand, within IAI46_00630 at 149.052 kb on - strand, within IAI46_00630 at 149.133 kb on + strand, within IAI46_00630 at 149.134 kb on - strand, within IAI46_00630 at 149.134 kb on - strand, within IAI46_00630 at 149.136 kb on + strand, within IAI46_00630 at 149.137 kb on - strand, within IAI46_00630 at 149.350 kb on - strand, within IAI46_00630 at 149.350 kb on - strand, within IAI46_00630 at 149.382 kb on + strand, within IAI46_00630 at 149.470 kb on - strand, within IAI46_00630 at 149.470 kb on - strand, within IAI46_00630 at 149.481 kb on - strand, within IAI46_00630 at 149.557 kb on + strand, within IAI46_00630 at 149.584 kb on + strand, within IAI46_00630
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 146,529 - IAI46_00615 0.67 +1.2 146,548 - IAI46_00615 0.69 +1.0 146,548 - IAI46_00615 0.69 +1.2 146,548 - IAI46_00615 0.69 +0.3 146,676 - IAI46_00615 0.84 +0.4 146,779 - +0.1 146,779 - +1.8 146,779 - +0.8 146,791 + -0.1 146,792 - +0.1 146,825 + -0.3 146,826 - -0.5 146,918 - IAI46_00620 0.17 +1.0 146,918 - IAI46_00620 0.17 -0.5 146,934 + IAI46_00620 0.19 +1.4 147,093 + IAI46_00620 0.40 +0.7 147,094 - IAI46_00620 0.41 -0.2 147,094 - IAI46_00620 0.41 -0.1 147,101 + IAI46_00620 0.42 +1.6 147,157 + IAI46_00620 0.49 -0.2 147,157 + IAI46_00620 0.49 +0.5 147,185 - IAI46_00620 0.53 -0.2 147,307 - IAI46_00620 0.70 +1.0 147,345 + IAI46_00620 0.75 -0.8 147,346 - IAI46_00620 0.75 +0.0 147,351 + IAI46_00620 0.76 +1.6 147,351 + IAI46_00620 0.76 +0.1 147,352 - IAI46_00620 0.76 -0.2 147,352 - IAI46_00620 0.76 +1.8 147,352 - IAI46_00620 0.76 +1.2 147,449 + IAI46_00620 0.89 +0.8 147,502 + +1.3 147,502 + +1.1 147,502 + +2.0 147,502 + +1.8 147,503 - +1.3 147,526 + +0.4 147,526 + -0.4 147,527 - +2.3 147,560 + +0.6 147,560 + +0.5 147,561 - +1.4 147,562 + +0.2 147,562 + +0.8 147,562 + +1.3 147,562 + +0.5 147,562 + +0.0 147,562 + -0.3 147,562 + +1.4 147,563 - -1.7 147,563 - +0.9 147,563 - +0.0 147,611 - +1.9 147,611 - -1.6 147,963 + IAI46_00625 0.40 -1.4 147,964 - IAI46_00625 0.40 +1.6 147,995 + IAI46_00625 0.42 +0.3 147,995 + IAI46_00625 0.42 +1.6 147,996 - IAI46_00625 0.43 +1.7 147,996 - IAI46_00625 0.43 +0.3 147,996 - IAI46_00625 0.43 +1.3 148,027 + IAI46_00625 0.45 +1.0 148,039 + IAI46_00625 0.46 -0.2 148,184 + IAI46_00625 0.59 +1.5 148,184 + IAI46_00625 0.59 +1.0 148,184 + IAI46_00625 0.59 +0.3 148,184 + IAI46_00625 0.59 -1.9 148,184 + IAI46_00625 0.59 +1.1 148,184 + IAI46_00625 0.59 -0.3 148,185 - IAI46_00625 0.59 +0.8 148,185 - IAI46_00625 0.59 -0.8 148,185 - IAI46_00625 0.59 +1.6 148,185 - IAI46_00625 0.59 +0.9 148,185 - IAI46_00625 0.59 +1.2 148,185 - IAI46_00625 0.59 +0.6 148,185 - IAI46_00625 0.59 -0.7 148,186 + IAI46_00625 0.59 +0.7 148,186 + IAI46_00625 0.59 -0.8 148,186 + IAI46_00625 0.59 +2.2 148,186 + IAI46_00625 0.59 -1.7 148,187 - IAI46_00625 0.59 -0.1 148,187 - IAI46_00625 0.59 +1.6 148,211 + IAI46_00625 0.62 -1.7 148,212 - IAI46_00625 0.62 +0.2 148,239 - IAI46_00625 0.64 +0.9 148,304 + IAI46_00625 0.70 +2.1 148,304 + IAI46_00625 0.70 -0.8 148,304 + IAI46_00625 0.70 +1.2 148,304 + IAI46_00625 0.70 +1.5 148,304 + IAI46_00625 0.70 +0.4 148,305 - IAI46_00625 0.70 +0.2 148,307 + IAI46_00625 0.70 +0.3 148,307 + IAI46_00625 0.70 +1.0 148,308 - IAI46_00625 0.70 -0.5 148,379 - IAI46_00625 0.76 -1.5 148,394 + IAI46_00625 0.78 +0.8 148,395 - IAI46_00625 0.78 +1.2 148,395 - IAI46_00625 0.78 -1.5 148,411 + IAI46_00625 0.79 +1.6 148,583 + +1.3 148,583 + +0.2 148,583 + -1.6 148,584 - +1.3 148,588 + +0.7 148,588 + +0.2 148,589 - -0.2 148,589 - +2.0 148,609 + +1.3 148,610 - -0.4 148,610 - +1.1 148,610 - -0.2 148,621 + +0.1 148,622 - +0.4 148,630 + -0.1 148,630 + +0.2 148,630 + -1.1 148,631 - -1.1 148,646 + +0.7 148,646 + -2.7 148,646 + +2.6 148,787 + IAI46_00630 0.11 -1.1 148,839 + IAI46_00630 0.15 -1.1 148,840 - IAI46_00630 0.15 +1.7 148,840 - IAI46_00630 0.15 -0.8 148,840 - IAI46_00630 0.15 +0.6 148,843 + IAI46_00630 0.16 +0.6 148,844 - IAI46_00630 0.16 +0.6 148,844 - IAI46_00630 0.16 -0.2 148,844 - IAI46_00630 0.16 +0.9 148,852 - IAI46_00630 0.16 +0.0 148,959 - IAI46_00630 0.25 +0.2 148,959 - IAI46_00630 0.25 -0.8 148,959 - IAI46_00630 0.25 +0.0 148,989 + IAI46_00630 0.27 -0.2 148,990 - IAI46_00630 0.27 -0.4 149,018 + IAI46_00630 0.30 +1.9 149,019 - IAI46_00630 0.30 +0.2 149,051 + IAI46_00630 0.32 +0.3 149,052 - IAI46_00630 0.32 +0.3 149,133 + IAI46_00630 0.39 -0.3 149,134 - IAI46_00630 0.39 -1.3 149,134 - IAI46_00630 0.39 +1.1 149,136 + IAI46_00630 0.39 +0.2 149,137 - IAI46_00630 0.39 -1.1 149,350 - IAI46_00630 0.56 -0.2 149,350 - IAI46_00630 0.56 +1.0 149,382 + IAI46_00630 0.59 +0.0 149,470 - IAI46_00630 0.66 +1.4 149,470 - IAI46_00630 0.66 +1.7 149,481 - IAI46_00630 0.67 +0.1 149,557 + IAI46_00630 0.73 +1.1 149,584 + IAI46_00630 0.75 +0.0
Or see this region's nucleotide sequence