Strain Fitness in Serratia liquefaciens MT49 around IAI46_00405

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00400 and IAI46_00405 are separated by 14 nucleotidesIAI46_00405 and IAI46_00410 are separated by 128 nucleotides IAI46_00400: IAI46_00400 - PTS beta-glucoside transporter subunit IIABC, at 90,174 to 92,036 _00400 IAI46_00405: IAI46_00405 - 6-phospho-beta-glucosidase, at 92,051 to 93,454 _00405 IAI46_00410: IAI46_00410 - carbohydrate porin, at 93,583 to 94,977 _00410 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.055 kb on + strand, within IAI46_00400at 91.056 kb on - strand, within IAI46_00400at 91.196 kb on + strand, within IAI46_00400at 91.217 kb on + strand, within IAI46_00400at 91.296 kb on + strand, within IAI46_00400at 91.392 kb on + strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.518 kb on + strand, within IAI46_00400at 91.518 kb on + strand, within IAI46_00400at 91.519 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.664 kb on - strand, within IAI46_00400at 91.743 kb on - strand, within IAI46_00400at 91.806 kb on - strand, within IAI46_00400at 91.806 kb on - strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.811 kb on + strand, within IAI46_00400at 91.811 kb on + strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.965 kb on + strandat 91.965 kb on + strandat 91.965 kb on + strandat 91.965 kb on + strandat 92.026 kb on + strandat 92.027 kb on - strandat 92.027 kb on - strandat 92.029 kb on + strandat 92.030 kb on - strandat 92.120 kb on + strandat 92.120 kb on + strandat 92.121 kb on - strandat 92.121 kb on - strandat 92.142 kb on + strandat 92.143 kb on - strandat 92.369 kb on + strand, within IAI46_00405at 92.370 kb on - strand, within IAI46_00405at 92.370 kb on - strand, within IAI46_00405at 92.400 kb on - strand, within IAI46_00405at 92.432 kb on + strand, within IAI46_00405at 92.433 kb on - strand, within IAI46_00405at 92.433 kb on - strand, within IAI46_00405at 92.445 kb on - strand, within IAI46_00405at 92.445 kb on - strand, within IAI46_00405at 92.507 kb on + strand, within IAI46_00405at 92.507 kb on + strand, within IAI46_00405at 92.508 kb on - strand, within IAI46_00405at 92.508 kb on - strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.532 kb on - strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.534 kb on - strand, within IAI46_00405at 92.534 kb on - strand, within IAI46_00405at 92.575 kb on + strand, within IAI46_00405at 92.575 kb on + strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.726 kb on - strand, within IAI46_00405at 92.726 kb on - strand, within IAI46_00405at 92.747 kb on + strand, within IAI46_00405at 92.849 kb on + strand, within IAI46_00405at 92.849 kb on + strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.851 kb on + strand, within IAI46_00405at 92.851 kb on + strand, within IAI46_00405at 92.852 kb on - strand, within IAI46_00405at 92.852 kb on - strand, within IAI46_00405at 92.861 kb on + strand, within IAI46_00405at 92.935 kb on + strand, within IAI46_00405at 92.936 kb on - strand, within IAI46_00405at 92.949 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 93.016 kb on + strand, within IAI46_00405at 93.016 kb on + strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.025 kb on + strand, within IAI46_00405at 93.083 kb on + strand, within IAI46_00405at 93.083 kb on + strand, within IAI46_00405at 93.083 kb on + strand, within IAI46_00405at 93.083 kb on + strand, within IAI46_00405at 93.084 kb on - strand, within IAI46_00405at 93.101 kb on + strand, within IAI46_00405at 93.102 kb on - strand, within IAI46_00405at 93.178 kb on + strand, within IAI46_00405at 93.178 kb on + strand, within IAI46_00405at 93.178 kb on + strand, within IAI46_00405at 93.179 kb on - strand, within IAI46_00405at 93.191 kb on + strand, within IAI46_00405at 93.203 kb on + strand, within IAI46_00405at 93.204 kb on - strand, within IAI46_00405at 93.305 kb on - strand, within IAI46_00405at 93.305 kb on - strand, within IAI46_00405at 93.327 kb on - strandat 93.327 kb on - strandat 93.334 kb on + strandat 93.335 kb on - strandat 93.398 kb on + strandat 93.398 kb on + strandat 93.459 kb on + strandat 93.459 kb on + strandat 93.498 kb on + strandat 93.498 kb on + strandat 93.498 kb on + strandat 93.499 kb on - strandat 93.499 kb on - strandat 93.502 kb on + strandat 93.503 kb on - strandat 93.564 kb on + strandat 93.576 kb on + strandat 93.577 kb on - strandat 93.577 kb on - strandat 93.579 kb on - strandat 93.581 kb on + strandat 93.589 kb on + strandat 93.597 kb on - strandat 93.597 kb on - strandat 93.608 kb on + strandat 93.623 kb on + strandat 93.624 kb on - strandat 93.795 kb on + strand, within IAI46_00410at 93.795 kb on + strand, within IAI46_00410at 93.796 kb on - strand, within IAI46_00410at 93.796 kb on - strand, within IAI46_00410at 93.806 kb on - strand, within IAI46_00410at 93.824 kb on - strand, within IAI46_00410at 93.824 kb on - strand, within IAI46_00410at 93.824 kb on - strand, within IAI46_00410at 93.841 kb on + strand, within IAI46_00410at 93.842 kb on - strand, within IAI46_00410at 93.843 kb on + strand, within IAI46_00410at 93.843 kb on + strand, within IAI46_00410at 93.843 kb on + strand, within IAI46_00410at 93.844 kb on - strand, within IAI46_00410at 93.844 kb on - strand, within IAI46_00410at 93.865 kb on + strand, within IAI46_00410at 93.865 kb on + strand, within IAI46_00410at 93.865 kb on + strand, within IAI46_00410at 93.866 kb on - strand, within IAI46_00410at 93.866 kb on - strand, within IAI46_00410at 93.866 kb on - strand, within IAI46_00410at 93.866 kb on - strand, within IAI46_00410at 93.866 kb on - strand, within IAI46_00410at 93.868 kb on - strand, within IAI46_00410at 93.868 kb on - strand, within IAI46_00410at 93.945 kb on + strand, within IAI46_00410at 93.966 kb on + strand, within IAI46_00410at 93.966 kb on + strand, within IAI46_00410at 93.967 kb on - strand, within IAI46_00410at 94.006 kb on - strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.213 kb on + strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.214 kb on - strand, within IAI46_00410at 94.215 kb on + strand, within IAI46_00410at 94.216 kb on - strand, within IAI46_00410at 94.240 kb on - strand, within IAI46_00410at 94.240 kb on - strand, within IAI46_00410at 94.253 kb on - strand, within IAI46_00410at 94.253 kb on - strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.353 kb on + strand, within IAI46_00410at 94.354 kb on - strand, within IAI46_00410at 94.420 kb on + strand, within IAI46_00410at 94.422 kb on + strand, within IAI46_00410at 94.423 kb on - strand, within IAI46_00410

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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91,055 + IAI46_00400 0.47 +0.5
91,056 - IAI46_00400 0.47 +0.0
91,196 + IAI46_00400 0.55 -0.3
91,217 + IAI46_00400 0.56 +0.2
91,296 + IAI46_00400 0.60 +0.5
91,392 + IAI46_00400 0.65 +0.5
91,393 - IAI46_00400 0.65 -0.1
91,393 - IAI46_00400 0.65 -0.7
91,393 - IAI46_00400 0.65 -0.2
91,518 + IAI46_00400 0.72 -0.4
91,518 + IAI46_00400 0.72 -0.2
91,519 - IAI46_00400 0.72 +0.0
91,619 - IAI46_00400 0.78 -0.3
91,619 - IAI46_00400 0.78 +2.4
91,619 - IAI46_00400 0.78 +0.0
91,664 - IAI46_00400 0.80 +0.2
91,743 - IAI46_00400 0.84 +0.0
91,806 - IAI46_00400 0.88 +1.6
91,806 - IAI46_00400 0.88 -0.1
91,807 + IAI46_00400 0.88 +0.9
91,807 + IAI46_00400 0.88 +0.6
91,807 + IAI46_00400 0.88 -0.6
91,808 - IAI46_00400 0.88 +1.1
91,808 - IAI46_00400 0.88 -0.4
91,808 - IAI46_00400 0.88 +0.5
91,808 - IAI46_00400 0.88 +0.5
91,808 - IAI46_00400 0.88 -0.4
91,808 - IAI46_00400 0.88 +0.5
91,808 - IAI46_00400 0.88 -1.4
91,808 - IAI46_00400 0.88 +0.3
91,811 + IAI46_00400 0.88 -0.9
91,811 + IAI46_00400 0.88 +0.4
91,812 - IAI46_00400 0.88 -0.5
91,812 - IAI46_00400 0.88 +1.0
91,812 - IAI46_00400 0.88 +0.2
91,845 + IAI46_00400 0.90 -0.6
91,845 + IAI46_00400 0.90 +1.0
91,845 + IAI46_00400 0.90 +0.2
91,846 - IAI46_00400 0.90 -0.1
91,846 - IAI46_00400 0.90 +0.2
91,846 - IAI46_00400 0.90 +0.6
91,846 - IAI46_00400 0.90 +0.0
91,965 + +0.2
91,965 + +0.7
91,965 + +0.0
91,965 + -0.3
92,026 + +0.5
92,027 - -1.1
92,027 - +0.5
92,029 + +0.7
92,030 - -0.6
92,120 + +0.0
92,120 + +1.3
92,121 - +0.2
92,121 - +0.1
92,142 + +0.1
92,143 - -0.3
92,369 + IAI46_00405 0.23 +0.8
92,370 - IAI46_00405 0.23 -0.3
92,370 - IAI46_00405 0.23 -0.4
92,400 - IAI46_00405 0.25 -0.3
92,432 + IAI46_00405 0.27 +1.3
92,433 - IAI46_00405 0.27 -1.2
92,433 - IAI46_00405 0.27 +0.2
92,445 - IAI46_00405 0.28 -0.1
92,445 - IAI46_00405 0.28 -0.7
92,507 + IAI46_00405 0.32 -0.2
92,507 + IAI46_00405 0.32 +0.2
92,508 - IAI46_00405 0.33 +0.3
92,508 - IAI46_00405 0.33 +0.5
92,531 + IAI46_00405 0.34 +0.7
92,531 + IAI46_00405 0.34 -0.5
92,531 + IAI46_00405 0.34 +0.8
92,532 - IAI46_00405 0.34 +1.8
92,533 + IAI46_00405 0.34 +0.0
92,533 + IAI46_00405 0.34 +0.8
92,533 + IAI46_00405 0.34 +0.6
92,533 + IAI46_00405 0.34 +0.3
92,534 - IAI46_00405 0.34 +1.0
92,534 - IAI46_00405 0.34 -0.2
92,575 + IAI46_00405 0.37 -0.3
92,575 + IAI46_00405 0.37 +0.4
92,576 - IAI46_00405 0.37 +1.4
92,576 - IAI46_00405 0.37 +1.0
92,576 - IAI46_00405 0.37 +1.8
92,725 + IAI46_00405 0.48 -0.1
92,725 + IAI46_00405 0.48 -0.1
92,725 + IAI46_00405 0.48 -0.3
92,726 - IAI46_00405 0.48 -0.9
92,726 - IAI46_00405 0.48 -0.5
92,747 + IAI46_00405 0.50 -0.6
92,849 + IAI46_00405 0.57 +1.0
92,849 + IAI46_00405 0.57 -0.4
92,850 - IAI46_00405 0.57 +0.2
92,850 - IAI46_00405 0.57 -0.1
92,850 - IAI46_00405 0.57 +0.5
92,850 - IAI46_00405 0.57 +0.5
92,850 - IAI46_00405 0.57 -0.4
92,851 + IAI46_00405 0.57 -0.1
92,851 + IAI46_00405 0.57 +1.6
92,852 - IAI46_00405 0.57 -1.5
92,852 - IAI46_00405 0.57 +0.2
92,861 + IAI46_00405 0.58 +0.2
92,935 + IAI46_00405 0.63 +0.2
92,936 - IAI46_00405 0.63 +0.6
92,949 - IAI46_00405 0.64 -0.1
92,952 - IAI46_00405 0.64 +0.3
92,952 - IAI46_00405 0.64 -1.6
92,952 - IAI46_00405 0.64 +0.8
92,952 - IAI46_00405 0.64 +1.3
93,016 + IAI46_00405 0.69 +0.4
93,016 + IAI46_00405 0.69 -1.4
93,017 - IAI46_00405 0.69 +0.2
93,017 - IAI46_00405 0.69 -2.7
93,017 - IAI46_00405 0.69 +0.1
93,025 + IAI46_00405 0.69 +1.2
93,083 + IAI46_00405 0.74 +1.2
93,083 + IAI46_00405 0.74 +1.4
93,083 + IAI46_00405 0.74 -0.7
93,083 + IAI46_00405 0.74 -0.5
93,084 - IAI46_00405 0.74 +0.3
93,101 + IAI46_00405 0.75 +1.8
93,102 - IAI46_00405 0.75 +0.0
93,178 + IAI46_00405 0.80 +0.2
93,178 + IAI46_00405 0.80 -0.2
93,178 + IAI46_00405 0.80 -0.6
93,179 - IAI46_00405 0.80 -0.0
93,191 + IAI46_00405 0.81 +0.0
93,203 + IAI46_00405 0.82 -0.0
93,204 - IAI46_00405 0.82 -2.0
93,305 - IAI46_00405 0.89 -2.7
93,305 - IAI46_00405 0.89 +0.2
93,327 - +0.1
93,327 - -0.7
93,334 + +1.6
93,335 - +0.0
93,398 + -0.3
93,398 + -0.2
93,459 + +0.8
93,459 + -1.1
93,498 + +0.2
93,498 + -0.9
93,498 + -0.4
93,499 - +0.3
93,499 - +0.1
93,502 + +0.4
93,503 - +0.7
93,564 + -0.3
93,576 + -0.8
93,577 - +2.2
93,577 - -0.2
93,579 - -0.4
93,581 + -0.1
93,589 + -0.6
93,597 - +0.7
93,597 - +0.4
93,608 + +0.3
93,623 + +0.3
93,624 - +1.1
93,795 + IAI46_00410 0.15 +0.5
93,795 + IAI46_00410 0.15 -0.0
93,796 - IAI46_00410 0.15 -0.5
93,796 - IAI46_00410 0.15 -0.1
93,806 - IAI46_00410 0.16 +0.5
93,824 - IAI46_00410 0.17 -1.9
93,824 - IAI46_00410 0.17 -2.1
93,824 - IAI46_00410 0.17 -0.8
93,841 + IAI46_00410 0.18 +0.4
93,842 - IAI46_00410 0.19 -0.1
93,843 + IAI46_00410 0.19 -0.3
93,843 + IAI46_00410 0.19 +0.6
93,843 + IAI46_00410 0.19 +0.7
93,844 - IAI46_00410 0.19 -0.3
93,844 - IAI46_00410 0.19 +0.3
93,865 + IAI46_00410 0.20 +0.2
93,865 + IAI46_00410 0.20 +0.2
93,865 + IAI46_00410 0.20 +0.9
93,866 - IAI46_00410 0.20 +0.7
93,866 - IAI46_00410 0.20 +0.3
93,866 - IAI46_00410 0.20 -0.4
93,866 - IAI46_00410 0.20 +0.6
93,866 - IAI46_00410 0.20 +0.0
93,868 - IAI46_00410 0.20 +0.1
93,868 - IAI46_00410 0.20 -0.6
93,945 + IAI46_00410 0.26 -0.1
93,966 + IAI46_00410 0.27 +0.1
93,966 + IAI46_00410 0.27 +0.4
93,967 - IAI46_00410 0.28 -0.1
94,006 - IAI46_00410 0.30 +0.1
94,213 + IAI46_00410 0.45 -0.5
94,213 + IAI46_00410 0.45 +0.5
94,213 + IAI46_00410 0.45 +0.0
94,214 - IAI46_00410 0.45 +1.1
94,214 - IAI46_00410 0.45 -0.2
94,214 - IAI46_00410 0.45 +1.4
94,214 - IAI46_00410 0.45 +0.9
94,215 + IAI46_00410 0.45 -0.6
94,216 - IAI46_00410 0.45 +0.3
94,240 - IAI46_00410 0.47 +0.8
94,240 - IAI46_00410 0.47 +1.2
94,253 - IAI46_00410 0.48 -0.6
94,253 - IAI46_00410 0.48 -0.4
94,353 + IAI46_00410 0.55 +0.5
94,353 + IAI46_00410 0.55 -0.0
94,353 + IAI46_00410 0.55 -0.6
94,354 - IAI46_00410 0.55 +1.2
94,420 + IAI46_00410 0.60 +0.9
94,422 + IAI46_00410 0.60 -0.6
94,423 - IAI46_00410 0.60 +0.7

Or see this region's nucleotide sequence