Strain Fitness in Serratia liquefaciens MT49 around IAI46_00330

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00325 and IAI46_00330 are separated by 102 nucleotidesIAI46_00330 and IAI46_00335 are separated by 31 nucleotides IAI46_00325: IAI46_00325 - esterase-like activity of phytase family protein, at 75,232 to 76,578 _00325 IAI46_00330: IAI46_00330 - tRNA-Sec, at 76,681 to 76,775 _00330 IAI46_00335: IAI46_00335 - nucleotidyltransferase domain-containing protein, at 76,807 to 77,551 _00335 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1at 75.811 kb on + strand, within IAI46_00325at 76.067 kb on - strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325at 76.167 kb on + strand, within IAI46_00325at 76.168 kb on - strand, within IAI46_00325at 76.206 kb on + strand, within IAI46_00325at 76.292 kb on + strand, within IAI46_00325at 76.295 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.348 kb on + strand, within IAI46_00325at 76.349 kb on - strand, within IAI46_00325at 76.350 kb on + strand, within IAI46_00325at 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.468 kb on - strandat 76.468 kb on - strandat 76.470 kb on + strandat 76.470 kb on + strandat 76.470 kb on + strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.488 kb on + strandat 76.488 kb on + strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.577 kb on - strandat 76.577 kb on - strandat 76.629 kb on - strandat 76.629 kb on - strandat 76.641 kb on - strandat 76.653 kb on - strandat 76.653 kb on - strandat 76.786 kb on + strandat 76.786 kb on + strandat 76.786 kb on + strandat 76.787 kb on - strandat 76.787 kb on - strandat 76.787 kb on - strandat 76.831 kb on - strandat 76.831 kb on - strandat 76.910 kb on - strand, within IAI46_00335at 76.927 kb on + strand, within IAI46_00335at 76.927 kb on + strand, within IAI46_00335at 76.928 kb on - strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.936 kb on + strand, within IAI46_00335at 76.936 kb on + strand, within IAI46_00335at 76.937 kb on - strand, within IAI46_00335at 76.937 kb on - strand, within IAI46_00335at 76.942 kb on + strand, within IAI46_00335at 76.943 kb on - strand, within IAI46_00335at 77.019 kb on + strand, within IAI46_00335at 77.019 kb on + strand, within IAI46_00335at 77.020 kb on - strand, within IAI46_00335at 77.029 kb on + strand, within IAI46_00335at 77.030 kb on - strand, within IAI46_00335at 77.133 kb on - strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.135 kb on - strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.271 kb on - strand, within IAI46_00335at 77.271 kb on - strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.409 kb on - strand, within IAI46_00335at 77.421 kb on + strand, within IAI46_00335at 77.422 kb on - strand, within IAI46_00335at 77.441 kb on - strand, within IAI46_00335at 77.476 kb on + strand, within IAI46_00335at 77.477 kb on - strandat 77.482 kb on + strandat 77.573 kb on + strandat 77.573 kb on + strandat 77.573 kb on + strandat 77.576 kb on - strandat 77.580 kb on + strandat 77.581 kb on - strandat 77.593 kb on + strandat 77.594 kb on - strandat 77.601 kb on + strandat 77.621 kb on + strandat 77.621 kb on + strandat 77.621 kb on + strandat 77.622 kb on - strandat 77.624 kb on + strandat 77.624 kb on + strandat 77.625 kb on - strandat 77.629 kb on + strandat 77.642 kb on + strandat 77.642 kb on + strandat 77.645 kb on + strandat 77.685 kb on + strandat 77.686 kb on - strandat 77.732 kb on + strandat 77.736 kb on - strandat 77.736 kb on - strandat 77.736 kb on - strandat 77.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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75,811 + IAI46_00325 0.43 -0.1
76,067 - IAI46_00325 0.62 +0.0
76,126 + IAI46_00325 0.66 +0.3
76,126 + IAI46_00325 0.66 +0.6
76,126 + IAI46_00325 0.66 -0.2
76,127 - IAI46_00325 0.66 -0.2
76,127 - IAI46_00325 0.66 -0.5
76,167 + IAI46_00325 0.69 -0.9
76,168 - IAI46_00325 0.69 -0.3
76,206 + IAI46_00325 0.72 +0.1
76,292 + IAI46_00325 0.79 -1.1
76,295 - IAI46_00325 0.79 +0.6
76,297 - IAI46_00325 0.79 +0.1
76,297 - IAI46_00325 0.79 +0.8
76,297 - IAI46_00325 0.79 -0.2
76,348 + IAI46_00325 0.83 +0.4
76,349 - IAI46_00325 0.83 +0.6
76,350 + IAI46_00325 0.83 -0.3
76,467 + -0.3
76,467 + +0.1
76,467 + +0.9
76,467 + +0.1
76,467 + +1.0
76,467 + -1.0
76,468 - -0.5
76,468 - +1.0
76,470 + -0.0
76,470 + -0.1
76,470 + +0.3
76,471 - +0.8
76,471 - -0.7
76,471 - -0.2
76,471 - -0.2
76,488 + +0.2
76,488 + +0.2
76,489 - +0.6
76,489 - +1.0
76,489 - +0.3
76,489 - +0.8
76,577 - -0.7
76,577 - +1.1
76,629 - -0.4
76,629 - +0.8
76,641 - +0.6
76,653 - +0.3
76,653 - -0.4
76,786 + -0.6
76,786 + +0.1
76,786 + +0.5
76,787 - +0.2
76,787 - +0.3
76,787 - +0.6
76,831 - +0.8
76,831 - +0.0
76,910 - IAI46_00335 0.14 +1.5
76,927 + IAI46_00335 0.16 -0.2
76,927 + IAI46_00335 0.16 +0.1
76,928 - IAI46_00335 0.16 +0.4
76,932 + IAI46_00335 0.17 +0.0
76,932 + IAI46_00335 0.17 +0.2
76,932 + IAI46_00335 0.17 +0.5
76,933 - IAI46_00335 0.17 -1.3
76,933 - IAI46_00335 0.17 +0.4
76,933 - IAI46_00335 0.17 +0.7
76,933 - IAI46_00335 0.17 +0.7
76,933 - IAI46_00335 0.17 -0.7
76,933 - IAI46_00335 0.17 +1.0
76,936 + IAI46_00335 0.17 -0.4
76,936 + IAI46_00335 0.17 +0.3
76,937 - IAI46_00335 0.17 -0.2
76,937 - IAI46_00335 0.17 -0.3
76,942 + IAI46_00335 0.18 +0.4
76,943 - IAI46_00335 0.18 +0.5
77,019 + IAI46_00335 0.28 +0.3
77,019 + IAI46_00335 0.28 -0.4
77,020 - IAI46_00335 0.29 -0.1
77,029 + IAI46_00335 0.30 -0.2
77,030 - IAI46_00335 0.30 +0.5
77,133 - IAI46_00335 0.44 +0.3
77,134 + IAI46_00335 0.44 +0.5
77,134 + IAI46_00335 0.44 -0.0
77,134 + IAI46_00335 0.44 -0.1
77,134 + IAI46_00335 0.44 +0.0
77,135 - IAI46_00335 0.44 +0.3
77,270 + IAI46_00335 0.62 +0.7
77,270 + IAI46_00335 0.62 +0.1
77,270 + IAI46_00335 0.62 +0.2
77,271 - IAI46_00335 0.62 +1.3
77,271 - IAI46_00335 0.62 +0.2
77,356 + IAI46_00335 0.74 -0.4
77,356 + IAI46_00335 0.74 -0.2
77,356 + IAI46_00335 0.74 -0.2
77,356 + IAI46_00335 0.74 -1.1
77,359 + IAI46_00335 0.74 +0.1
77,359 + IAI46_00335 0.74 +1.0
77,359 + IAI46_00335 0.74 -0.3
77,360 - IAI46_00335 0.74 +0.1
77,360 - IAI46_00335 0.74 -0.7
77,360 - IAI46_00335 0.74 -0.5
77,409 - IAI46_00335 0.81 -1.4
77,421 + IAI46_00335 0.82 -0.2
77,422 - IAI46_00335 0.83 -0.5
77,441 - IAI46_00335 0.85 +0.7
77,476 + IAI46_00335 0.90 -0.0
77,477 - +1.1
77,482 + -0.8
77,573 + +0.6
77,573 + +0.4
77,573 + +0.4
77,576 - -0.9
77,580 + +0.9
77,581 - -2.3
77,593 + -0.2
77,594 - +0.8
77,601 + -0.1
77,621 + -0.2
77,621 + +0.8
77,621 + -1.1
77,622 - -1.0
77,624 + +0.0
77,624 + +1.2
77,625 - +0.6
77,629 + -0.6
77,642 + +0.3
77,642 + -0.1
77,645 + -0.2
77,685 + +0.3
77,686 - +0.3
77,732 + +0.0
77,736 - +0.5
77,736 - +1.0
77,736 - -0.2
77,736 - +1.7

Or see this region's nucleotide sequence