Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0561

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0559 and Echvi_0560 are separated by 154 nucleotidesEchvi_0560 and Echvi_0561 are separated by 145 nucleotidesEchvi_0561 and Echvi_0562 are separated by 28 nucleotides Echvi_0559: Echvi_0559 - hypothetical protein, at 631,967 to 633,889 _0559 Echvi_0560: Echvi_0560 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 634,044 to 634,712 _0560 Echvi_0561: Echvi_0561 - Sugar kinases, ribokinase family, at 634,858 to 635,865 _0561 Echvi_0562: Echvi_0562 - hypothetical protein, at 635,894 to 637,057 _0562 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 633.904 kb on + strandat 633.904 kb on + strandat 633.904 kb on + strandat 633.904 kb on + strandat 633.920 kb on - strandat 633.933 kb on + strandat 633.933 kb on + strandat 633.933 kb on + strandat 633.933 kb on + strandat 634.003 kb on - strandat 634.003 kb on - strandat 634.014 kb on + strandat 634.018 kb on + strandat 634.018 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.024 kb on - strandat 634.025 kb on + strandat 634.025 kb on + strandat 634.026 kb on - strandat 634.069 kb on + strandat 634.069 kb on + strandat 634.069 kb on + strandat 634.163 kb on + strand, within Echvi_0560at 634.164 kb on - strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.262 kb on + strand, within Echvi_0560at 634.262 kb on + strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.269 kb on + strand, within Echvi_0560at 634.270 kb on - strand, within Echvi_0560at 634.270 kb on - strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.294 kb on - strand, within Echvi_0560at 634.294 kb on - strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.358 kb on + strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.363 kb on - strand, within Echvi_0560at 634.363 kb on - strand, within Echvi_0560at 634.450 kb on - strand, within Echvi_0560at 634.463 kb on - strand, within Echvi_0560at 634.466 kb on - strand, within Echvi_0560at 634.585 kb on + strand, within Echvi_0560at 634.601 kb on + strand, within Echvi_0560at 634.708 kb on - strandat 634.711 kb on - strandat 634.741 kb on - strandat 634.752 kb on + strandat 634.752 kb on + strandat 634.753 kb on - strandat 634.765 kb on - strandat 634.799 kb on + strandat 634.807 kb on + strandat 634.808 kb on - strandat 634.809 kb on + strandat 634.809 kb on + strandat 634.810 kb on - strandat 634.832 kb on + strandat 634.832 kb on + strandat 634.995 kb on + strand, within Echvi_0561at 635.073 kb on + strand, within Echvi_0561at 635.265 kb on + strandat 635.275 kb on + strand, within Echvi_0561at 635.275 kb on + strand, within Echvi_0561at 635.276 kb on - strandat 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.391 kb on + strand, within Echvi_0561at 635.393 kb on + strand, within Echvi_0561at 635.400 kb on - strand, within Echvi_0561at 635.521 kb on - strand, within Echvi_0561at 635.524 kb on - strand, within Echvi_0561at 635.627 kb on + strand, within Echvi_0561at 635.630 kb on + strand, within Echvi_0561at 635.903 kb on + strandat 635.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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633,904 + -0.2
633,904 + +1.7
633,904 + -0.7
633,904 + +1.8
633,920 - -0.4
633,933 + -0.5
633,933 + +1.3
633,933 + -0.5
633,933 + +0.4
634,003 - +0.6
634,003 - -0.3
634,014 + -0.2
634,018 + -0.7
634,018 + +0.8
634,023 + +0.1
634,023 + -0.7
634,023 + -0.7
634,023 + -2.2
634,023 + +0.3
634,024 - -0.1
634,025 + -1.0
634,025 + +0.2
634,026 - -1.2
634,069 + +0.0
634,069 + +0.2
634,069 + -0.4
634,163 + Echvi_0560 0.18 -0.5
634,164 - Echvi_0560 0.18 +0.3
634,260 + Echvi_0560 0.32 -2.8
634,260 + Echvi_0560 0.32 -1.0
634,260 + Echvi_0560 0.32 +1.1
634,260 + Echvi_0560 0.32 -0.1
634,261 - Echvi_0560 0.32 +1.0
634,261 - Echvi_0560 0.32 +0.2
634,261 - Echvi_0560 0.32 -2.7
634,262 + Echvi_0560 0.33 +0.3
634,262 + Echvi_0560 0.33 +0.4
634,263 - Echvi_0560 0.33 -0.5
634,263 - Echvi_0560 0.33 -0.5
634,263 - Echvi_0560 0.33 +0.5
634,263 - Echvi_0560 0.33 +0.5
634,266 + Echvi_0560 0.33 +0.1
634,266 + Echvi_0560 0.33 +0.3
634,266 + Echvi_0560 0.33 -0.9
634,266 + Echvi_0560 0.33 +0.3
634,266 + Echvi_0560 0.33 +0.1
634,266 + Echvi_0560 0.33 -0.2
634,267 - Echvi_0560 0.33 +0.8
634,267 - Echvi_0560 0.33 -1.3
634,267 - Echvi_0560 0.33 -0.1
634,269 + Echvi_0560 0.34 +0.1
634,270 - Echvi_0560 0.34 +0.1
634,270 - Echvi_0560 0.34 +0.7
634,293 + Echvi_0560 0.37 +0.0
634,293 + Echvi_0560 0.37 +0.0
634,293 + Echvi_0560 0.37 +1.9
634,294 - Echvi_0560 0.37 +0.4
634,294 - Echvi_0560 0.37 +1.3
634,351 + Echvi_0560 0.46 +0.2
634,351 + Echvi_0560 0.46 -0.0
634,351 + Echvi_0560 0.46 +0.1
634,351 + Echvi_0560 0.46 +0.1
634,352 - Echvi_0560 0.46 +0.5
634,352 - Echvi_0560 0.46 +0.8
634,352 - Echvi_0560 0.46 +0.3
634,358 + Echvi_0560 0.47 +1.0
634,359 - Echvi_0560 0.47 -0.9
634,359 - Echvi_0560 0.47 +0.7
634,359 - Echvi_0560 0.47 -0.4
634,362 + Echvi_0560 0.48 -0.5
634,362 + Echvi_0560 0.48 -0.3
634,362 + Echvi_0560 0.48 -0.6
634,363 - Echvi_0560 0.48 +0.8
634,363 - Echvi_0560 0.48 -0.6
634,450 - Echvi_0560 0.61 -0.9
634,463 - Echvi_0560 0.63 +0.5
634,466 - Echvi_0560 0.63 -1.3
634,585 + Echvi_0560 0.81 +0.7
634,601 + Echvi_0560 0.83 -0.3
634,708 - +0.7
634,711 - -0.5
634,741 - +0.3
634,752 + +0.1
634,752 + +0.5
634,753 - -0.3
634,765 - -0.1
634,799 + -0.4
634,807 + +0.0
634,808 - -0.2
634,809 + -0.3
634,809 + -0.9
634,810 - -0.9
634,832 + +0.1
634,832 + +0.5
634,995 + Echvi_0561 0.14 -0.5
635,073 + Echvi_0561 0.21 -1.9
635,265 + +2.3
635,275 + Echvi_0561 0.41 -1.3
635,275 + Echvi_0561 0.41 -0.7
635,276 - +0.7
635,389 + Echvi_0561 0.53 -1.9
635,389 + Echvi_0561 0.53 -0.3
635,389 + Echvi_0561 0.53 -1.2
635,391 + Echvi_0561 0.53 -2.9
635,393 + Echvi_0561 0.53 -0.9
635,400 - Echvi_0561 0.54 +0.3
635,521 - Echvi_0561 0.66 -0.5
635,524 - Echvi_0561 0.66 +1.7
635,627 + Echvi_0561 0.76 -1.2
635,630 + Echvi_0561 0.77 -1.3
635,903 + -1.9
635,908 + +1.1

Or see this region's nucleotide sequence