Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21340

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21330 and CA264_21335 are separated by 79 nucleotidesCA264_21335 and CA264_21340 are separated by 79 nucleotidesCA264_21340 and CA264_21345 are separated by 201 nucleotidesCA264_21345 and CA264_21350 are separated by 189 nucleotides CA264_21330: CA264_21330 - MBL fold metallo-hydrolase, at 130,050 to 131,405 _21330 CA264_21335: CA264_21335 - hypothetical protein, at 131,485 to 131,742 _21335 CA264_21340: CA264_21340 - hypothetical protein, at 131,822 to 132,412 _21340 CA264_21345: CA264_21345 - transcriptional regulator, at 132,614 to 132,946 _21345 CA264_21350: CA264_21350 - nucleoside-diphosphate sugar epimerase, at 133,136 to 134,242 _21350 Position (kb) 131 132 133Strain fitness (log2 ratio) -1 0 1 2at 130.833 kb on + strand, within CA264_21330at 130.833 kb on + strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.984 kb on - strand, within CA264_21330at 131.346 kb on + strandat 131.353 kb on + strandat 131.354 kb on - strandat 131.415 kb on + strandat 131.420 kb on + strandat 131.427 kb on + strandat 131.430 kb on + strandat 131.431 kb on - strandat 131.431 kb on - strandat 131.432 kb on + strandat 131.433 kb on - strandat 131.433 kb on - strandat 131.490 kb on - strandat 131.588 kb on + strand, within CA264_21335at 131.589 kb on - strand, within CA264_21335at 131.620 kb on + strand, within CA264_21335at 131.773 kb on + strandat 131.815 kb on + strandat 131.884 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.891 kb on + strand, within CA264_21340at 131.892 kb on - strand, within CA264_21340at 131.897 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.908 kb on - strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.118 kb on + strand, within CA264_21340at 132.131 kb on + strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.206 kb on - strand, within CA264_21340at 132.298 kb on + strand, within CA264_21340at 132.406 kb on + strandat 132.411 kb on - strandat 132.419 kb on + strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.537 kb on - strandat 132.542 kb on + strandat 132.549 kb on - strandat 132.549 kb on - strandat 132.568 kb on - strandat 132.568 kb on - strandat 132.605 kb on - strandat 132.643 kb on + strandat 132.644 kb on - strandat 132.644 kb on - strandat 132.652 kb on - strand, within CA264_21345at 132.703 kb on - strand, within CA264_21345at 132.731 kb on - strand, within CA264_21345at 132.758 kb on - strand, within CA264_21345at 132.802 kb on - strand, within CA264_21345at 132.802 kb on - strand, within CA264_21345at 132.831 kb on + strand, within CA264_21345at 132.832 kb on - strand, within CA264_21345at 132.832 kb on - strand, within CA264_21345at 132.842 kb on + strand, within CA264_21345at 132.886 kb on + strand, within CA264_21345at 132.947 kb on + strandat 133.035 kb on - strandat 133.039 kb on - strandat 133.039 kb on - strandat 133.039 kb on - strandat 133.044 kb on + strandat 133.061 kb on - strandat 133.063 kb on - strandat 133.079 kb on + strandat 133.079 kb on + strandat 133.085 kb on + strandat 133.087 kb on + strandat 133.087 kb on + strandat 133.088 kb on - strandat 133.096 kb on - strandat 133.101 kb on + strandat 133.101 kb on + strandat 133.101 kb on + strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.112 kb on - strandat 133.120 kb on - strandat 133.175 kb on - strandat 133.212 kb on + strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.219 kb on + strandat 133.219 kb on + strandat 133.219 kb on + strandat 133.222 kb on + strandat 133.247 kb on + strand, within CA264_21350at 133.248 kb on - strand, within CA264_21350at 133.248 kb on - strand, within CA264_21350at 133.248 kb on - strandat 133.257 kb on + strand, within CA264_21350at 133.319 kb on - strand, within CA264_21350at 133.319 kb on - strand, within CA264_21350at 133.321 kb on + strand, within CA264_21350at 133.322 kb on - strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.410 kb on - strand, within CA264_21350at 133.412 kb on + strand, within CA264_21350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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130,833 + CA264_21330 0.58 -0.5
130,833 + CA264_21330 0.58 -0.4
130,834 - CA264_21330 0.58 -1.0
130,834 - CA264_21330 0.58 +0.3
130,834 - CA264_21330 0.58 +0.6
130,964 - CA264_21330 0.67 -0.1
130,964 - CA264_21330 0.67 -1.3
130,984 - CA264_21330 0.69 -0.7
131,346 + +0.1
131,353 + -0.5
131,354 - -0.1
131,415 + -0.1
131,420 + +0.1
131,427 + -0.1
131,430 + +1.1
131,431 - +1.0
131,431 - +0.2
131,432 + -0.0
131,433 - -0.4
131,433 - -0.9
131,490 - +1.5
131,588 + CA264_21335 0.40 +1.3
131,589 - CA264_21335 0.40 +0.0
131,620 + CA264_21335 0.52 -0.1
131,773 + -0.4
131,815 + +0.1
131,884 + CA264_21340 0.10 +0.5
131,889 + CA264_21340 0.11 +2.3
131,889 + CA264_21340 0.11 +0.8
131,891 + CA264_21340 0.12 -0.6
131,892 - CA264_21340 0.12 +0.3
131,897 - CA264_21340 0.13 +0.2
131,903 - CA264_21340 0.14 -0.0
131,903 - CA264_21340 0.14 +0.6
131,908 - CA264_21340 0.15 -1.2
131,914 + CA264_21340 0.16 +1.5
131,914 + CA264_21340 0.16 +0.1
131,915 - CA264_21340 0.16 -0.7
131,915 - CA264_21340 0.16 +1.4
132,047 - CA264_21340 0.38 -0.3
132,047 - CA264_21340 0.38 -0.1
132,118 + CA264_21340 0.50 +0.1
132,131 + CA264_21340 0.52 +0.4
132,132 - CA264_21340 0.52 -0.8
132,132 - CA264_21340 0.52 -0.1
132,206 - CA264_21340 0.65 -0.9
132,298 + CA264_21340 0.81 +1.5
132,406 + -0.0
132,411 - -0.1
132,419 + +0.2
132,420 - -0.4
132,420 - +0.1
132,420 - +0.3
132,420 - +0.4
132,420 - +0.9
132,537 - +0.6
132,542 + -0.3
132,549 - +0.2
132,549 - +0.1
132,568 - +0.3
132,568 - -0.2
132,605 - +0.1
132,643 + +1.8
132,644 - +0.1
132,644 - +0.2
132,652 - CA264_21345 0.11 -0.6
132,703 - CA264_21345 0.27 -0.0
132,731 - CA264_21345 0.35 +0.3
132,758 - CA264_21345 0.43 +0.1
132,802 - CA264_21345 0.56 +1.1
132,802 - CA264_21345 0.56 +0.7
132,831 + CA264_21345 0.65 +0.3
132,832 - CA264_21345 0.65 -0.5
132,832 - CA264_21345 0.65 +0.0
132,842 + CA264_21345 0.68 +0.4
132,886 + CA264_21345 0.82 -0.4
132,947 + -0.1
133,035 - -0.2
133,039 - +0.3
133,039 - +0.5
133,039 - -0.0
133,044 + -0.1
133,061 - -0.1
133,063 - +0.4
133,079 + +0.6
133,079 + +0.3
133,085 + +0.0
133,087 + -0.2
133,087 + +0.8
133,088 - +0.8
133,096 - -1.2
133,101 + +0.4
133,101 + -0.8
133,101 + +0.3
133,102 - +0.3
133,102 - -0.1
133,102 - +0.4
133,102 - +0.1
133,112 - +0.4
133,120 - -0.1
133,175 - +0.3
133,212 + +0.2
133,213 - -0.5
133,213 - -1.0
133,213 - -0.7
133,213 - +0.8
133,219 + -0.9
133,219 + -0.2
133,219 + +0.2
133,222 + +1.1
133,247 + CA264_21350 0.10 +1.7
133,248 - CA264_21350 0.10 -0.0
133,248 - CA264_21350 0.10 -0.3
133,248 - +1.5
133,257 + CA264_21350 0.11 -0.5
133,319 - CA264_21350 0.17 -0.6
133,319 - CA264_21350 0.17 -0.1
133,321 + CA264_21350 0.17 +1.2
133,322 - CA264_21350 0.17 +0.0
133,383 + CA264_21350 0.22 -0.6
133,383 + CA264_21350 0.22 +0.8
133,384 - CA264_21350 0.22 -0.2
133,384 - CA264_21350 0.22 -0.2
133,410 - CA264_21350 0.25 +0.5
133,412 + CA264_21350 0.25 -0.5

Or see this region's nucleotide sequence