Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21035

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21025 and CA264_21030 are separated by 35 nucleotidesCA264_21030 and CA264_21035 are separated by 104 nucleotidesCA264_21035 and CA264_21040 overlap by 4 nucleotides CA264_21025: CA264_21025 - conjugative transposon protein TraN, at 66,357 to 67,145 _21025 CA264_21030: CA264_21030 - hypothetical protein, at 67,181 to 67,600 _21030 CA264_21035: CA264_21035 - mobilization protein, at 67,705 to 69,672 _21035 CA264_21040: CA264_21040 - transcriptional regulator, at 69,669 to 70,019 _21040 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 66.771 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.822 kb on - strand, within CA264_21025at 66.851 kb on - strand, within CA264_21025at 66.857 kb on + strand, within CA264_21025at 66.881 kb on + strand, within CA264_21025at 67.114 kb on - strandat 67.141 kb on + strandat 67.142 kb on - strandat 67.176 kb on + strandat 67.181 kb on - strandat 67.209 kb on - strandat 67.293 kb on - strand, within CA264_21030at 67.322 kb on + strand, within CA264_21030at 67.325 kb on - strand, within CA264_21030at 67.371 kb on - strand, within CA264_21030at 67.455 kb on + strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.539 kb on + strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.668 kb on + strandat 67.668 kb on + strandat 67.668 kb on + strandat 67.676 kb on - strandat 67.695 kb on - strandat 67.704 kb on + strandat 67.755 kb on + strandat 67.756 kb on - strandat 67.768 kb on - strandat 67.781 kb on + strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.798 kb on - strandat 67.812 kb on + strandat 67.812 kb on + strandat 67.813 kb on - strandat 67.816 kb on + strandat 67.816 kb on + strandat 67.817 kb on - strandat 67.845 kb on - strandat 67.845 kb on - strandat 67.861 kb on + strandat 67.861 kb on + strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.965 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.117 kb on + strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.142 kb on + strand, within CA264_21035at 68.143 kb on - strand, within CA264_21035at 68.144 kb on + strand, within CA264_21035at 68.145 kb on - strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.249 kb on - strand, within CA264_21035at 68.251 kb on + strand, within CA264_21035at 68.251 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.413 kb on - strand, within CA264_21035at 68.413 kb on - strand, within CA264_21035at 68.440 kb on + strand, within CA264_21035at 68.443 kb on + strand, within CA264_21035at 68.449 kb on + strand, within CA264_21035at 68.461 kb on - strand, within CA264_21035at 68.554 kb on + strand, within CA264_21035at 68.686 kb on + strand, within CA264_21035at 68.735 kb on + strand, within CA264_21035at 68.736 kb on - strand, within CA264_21035at 68.749 kb on - strand, within CA264_21035at 68.758 kb on + strand, within CA264_21035at 68.758 kb on + strand, within CA264_21035at 68.759 kb on - strand, within CA264_21035at 68.830 kb on + strand, within CA264_21035at 68.830 kb on + strand, within CA264_21035at 68.830 kb on + strand, within CA264_21035at 68.830 kb on + strand, within CA264_21035at 68.831 kb on - strand, within CA264_21035at 68.832 kb on + strand, within CA264_21035at 68.832 kb on + strand, within CA264_21035at 68.833 kb on - strand, within CA264_21035at 68.883 kb on + strand, within CA264_21035at 69.109 kb on - strand, within CA264_21035at 69.115 kb on + strand, within CA264_21035at 69.116 kb on - strand, within CA264_21035at 69.116 kb on - strand, within CA264_21035at 69.119 kb on + strand, within CA264_21035at 69.119 kb on + strand, within CA264_21035at 69.119 kb on + strand, within CA264_21035at 69.120 kb on - strand, within CA264_21035at 69.120 kb on - strand, within CA264_21035at 69.164 kb on + strand, within CA264_21035at 69.164 kb on + strand, within CA264_21035at 69.164 kb on + strand, within CA264_21035at 69.164 kb on + strand, within CA264_21035at 69.165 kb on - strand, within CA264_21035at 69.192 kb on - strand, within CA264_21035at 69.257 kb on + strand, within CA264_21035at 69.258 kb on - strand, within CA264_21035at 69.279 kb on + strand, within CA264_21035at 69.315 kb on + strand, within CA264_21035at 69.361 kb on - strand, within CA264_21035at 69.449 kb on + strand, within CA264_21035at 69.449 kb on + strand, within CA264_21035at 69.469 kb on + strand, within CA264_21035at 69.469 kb on + strand, within CA264_21035at 69.470 kb on - strand, within CA264_21035at 69.481 kb on + strandat 69.481 kb on + strandat 69.530 kb on + strandat 69.550 kb on + strandat 69.631 kb on - strandat 69.662 kb on + strandat 69.669 kb on - strandat 69.676 kb on + strandat 69.682 kb on + strandat 69.778 kb on + strand, within CA264_21040at 69.823 kb on + strand, within CA264_21040at 69.823 kb on + strand, within CA264_21040at 69.997 kb on + strandat 70.017 kb on + strandat 70.018 kb on - strandat 70.051 kb on - strandat 70.060 kb on + strandat 70.063 kb on + strandat 70.063 kb on + strandat 70.065 kb on + strandat 70.160 kb on - strandat 70.199 kb on - strandat 70.343 kb on + strandat 70.343 kb on + strandat 70.344 kb on - strandat 70.361 kb on - strandat 70.370 kb on + strandat 70.370 kb on + strandat 70.391 kb on + strandat 70.399 kb on + strandat 70.400 kb on - strandat 70.402 kb on - strandat 70.420 kb on - strandat 70.458 kb on - strandat 70.500 kb on + strandat 70.500 kb on + strandat 70.500 kb on + strandat 70.515 kb on + strandat 70.533 kb on - strandat 70.571 kb on - strandat 70.574 kb on - strandat 70.579 kb on + strandat 70.581 kb on + strandat 70.582 kb on - strandat 70.582 kb on - strandat 70.582 kb on - strandat 70.585 kb on + strandat 70.585 kb on + strandat 70.586 kb on - strandat 70.586 kb on - strandat 70.586 kb on - strandat 70.587 kb on + strandat 70.587 kb on + strandat 70.587 kb on + strandat 70.588 kb on - strandat 70.588 kb on - strandat 70.631 kb on - strandat 70.631 kb on - strandat 70.634 kb on + strandat 70.635 kb on - strandat 70.635 kb on - strandat 70.638 kb on - strandat 70.638 kb on - strandat 70.641 kb on + strandat 70.641 kb on + strandat 70.642 kb on - strandat 70.671 kb on + strandat 70.671 kb on + strandat 70.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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66,771 - CA264_21025 0.52 +0.7
66,771 - CA264_21025 0.52 -0.0
66,819 + CA264_21025 0.59 -0.4
66,819 + CA264_21025 0.59 -0.0
66,819 + CA264_21025 0.59 +0.8
66,819 + CA264_21025 0.59 +0.7
66,820 - CA264_21025 0.59 -0.9
66,820 - CA264_21025 0.59 -0.1
66,822 - CA264_21025 0.59 -0.3
66,851 - CA264_21025 0.63 +0.8
66,857 + CA264_21025 0.63 -2.5
66,881 + CA264_21025 0.66 +0.2
67,114 - +1.2
67,141 + +0.6
67,142 - +1.1
67,176 + +0.2
67,181 - -0.1
67,209 - +1.7
67,293 - CA264_21030 0.27 +1.2
67,322 + CA264_21030 0.34 +0.5
67,325 - CA264_21030 0.34 +0.0
67,371 - CA264_21030 0.45 +0.0
67,455 + CA264_21030 0.65 -0.1
67,456 - CA264_21030 0.65 -0.9
67,456 - CA264_21030 0.65 -0.4
67,539 + CA264_21030 0.85 -0.4
67,540 - CA264_21030 0.85 -0.3
67,540 - CA264_21030 0.85 -0.3
67,668 + -0.0
67,668 + +0.4
67,668 + +0.1
67,676 - +0.3
67,695 - -0.7
67,704 + +0.6
67,755 + +0.2
67,756 - +1.7
67,768 - +0.5
67,781 + +0.2
67,782 - +1.2
67,782 - +1.4
67,782 - +0.5
67,782 - -0.7
67,782 - +1.0
67,798 - -0.2
67,812 + +0.6
67,812 + +0.0
67,813 - +0.4
67,816 + -0.6
67,816 + +0.2
67,817 - -0.5
67,845 - -0.6
67,845 - -0.3
67,861 + +0.4
67,861 + +0.0
67,874 - +0.5
67,874 - -0.3
67,874 - +0.1
67,874 - +0.0
67,965 + CA264_21035 0.13 -1.4
68,077 + CA264_21035 0.19 +0.0
68,077 + CA264_21035 0.19 -0.0
68,077 + CA264_21035 0.19 -0.2
68,117 + CA264_21035 0.21 -0.4
68,118 - CA264_21035 0.21 +0.0
68,118 - CA264_21035 0.21 +0.4
68,142 + CA264_21035 0.22 -0.8
68,143 - CA264_21035 0.22 +0.4
68,144 + CA264_21035 0.22 +1.4
68,145 - CA264_21035 0.22 +0.1
68,248 + CA264_21035 0.28 +1.1
68,248 + CA264_21035 0.28 -0.2
68,248 + CA264_21035 0.28 -0.1
68,248 + CA264_21035 0.28 -0.7
68,248 + CA264_21035 0.28 +2.3
68,249 - CA264_21035 0.28 -0.8
68,251 + CA264_21035 0.28 +0.1
68,251 + CA264_21035 0.28 +0.3
68,394 + CA264_21035 0.35 +0.0
68,394 + CA264_21035 0.35 +0.1
68,394 + CA264_21035 0.35 +0.1
68,413 - CA264_21035 0.36 -0.4
68,413 - CA264_21035 0.36 -0.6
68,440 + CA264_21035 0.37 +1.1
68,443 + CA264_21035 0.38 -2.1
68,449 + CA264_21035 0.38 -0.6
68,461 - CA264_21035 0.38 -0.4
68,554 + CA264_21035 0.43 +1.6
68,686 + CA264_21035 0.50 +0.1
68,735 + CA264_21035 0.52 -0.4
68,736 - CA264_21035 0.52 -0.0
68,749 - CA264_21035 0.53 +0.1
68,758 + CA264_21035 0.54 +0.3
68,758 + CA264_21035 0.54 +0.3
68,759 - CA264_21035 0.54 -0.1
68,830 + CA264_21035 0.57 +0.5
68,830 + CA264_21035 0.57 +0.4
68,830 + CA264_21035 0.57 -0.1
68,830 + CA264_21035 0.57 +0.1
68,831 - CA264_21035 0.57 +0.1
68,832 + CA264_21035 0.57 +0.3
68,832 + CA264_21035 0.57 +0.8
68,833 - CA264_21035 0.57 +0.2
68,883 + CA264_21035 0.60 +0.4
69,109 - CA264_21035 0.71 -0.5
69,115 + CA264_21035 0.72 +0.2
69,116 - CA264_21035 0.72 -0.0
69,116 - CA264_21035 0.72 +0.7
69,119 + CA264_21035 0.72 +0.7
69,119 + CA264_21035 0.72 -1.2
69,119 + CA264_21035 0.72 +0.1
69,120 - CA264_21035 0.72 +0.2
69,120 - CA264_21035 0.72 -1.1
69,164 + CA264_21035 0.74 +0.8
69,164 + CA264_21035 0.74 +0.9
69,164 + CA264_21035 0.74 +0.7
69,164 + CA264_21035 0.74 +0.4
69,165 - CA264_21035 0.74 +1.9
69,192 - CA264_21035 0.76 -0.1
69,257 + CA264_21035 0.79 +1.0
69,258 - CA264_21035 0.79 +0.1
69,279 + CA264_21035 0.80 -0.3
69,315 + CA264_21035 0.82 -0.3
69,361 - CA264_21035 0.84 +0.7
69,449 + CA264_21035 0.89 +0.3
69,449 + CA264_21035 0.89 +0.4
69,469 + CA264_21035 0.90 -0.1
69,469 + CA264_21035 0.90 +0.3
69,470 - CA264_21035 0.90 -0.5
69,481 + +0.4
69,481 + -0.5
69,530 + -0.3
69,550 + -0.3
69,631 - +0.0
69,662 + -0.2
69,669 - -0.4
69,676 + +1.2
69,682 + -1.2
69,778 + CA264_21040 0.31 +0.7
69,823 + CA264_21040 0.44 +0.3
69,823 + CA264_21040 0.44 -0.2
69,997 + -1.8
70,017 + +0.7
70,018 - +0.4
70,051 - -0.4
70,060 + +1.3
70,063 + +0.0
70,063 + +0.1
70,065 + +0.5
70,160 - +0.4
70,199 - -0.2
70,343 + -0.1
70,343 + +0.9
70,344 - -1.8
70,361 - +0.1
70,370 + -0.6
70,370 + +1.2
70,391 + +0.9
70,399 + +0.1
70,400 - +0.5
70,402 - +0.0
70,420 - -0.3
70,458 - -0.7
70,500 + +0.3
70,500 + +2.1
70,500 + +0.4
70,515 + +0.3
70,533 - +0.8
70,571 - -0.1
70,574 - +0.1
70,579 + -0.3
70,581 + +0.7
70,582 - -1.3
70,582 - -0.9
70,582 - +0.2
70,585 + +0.2
70,585 + -0.3
70,586 - -0.6
70,586 - -0.6
70,586 - -0.5
70,587 + +0.4
70,587 + +0.1
70,587 + -1.4
70,588 - -0.1
70,588 - -0.0
70,631 - +1.4
70,631 - +0.1
70,634 + +0.9
70,635 - -0.4
70,635 - -0.7
70,638 - +0.4
70,638 - +0.3
70,641 + +0.6
70,641 + +0.8
70,642 - -0.2
70,671 + +0.8
70,671 + +0.8
70,672 - +0.0

Or see this region's nucleotide sequence