Experiment: m.b. Cobalt chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21025 and CA264_21030 are separated by 35 nucleotides CA264_21030 and CA264_21035 are separated by 104 nucleotides CA264_21035 and CA264_21040 overlap by 4 nucleotides
CA264_21025: CA264_21025 - conjugative transposon protein TraN, at 66,357 to 67,145
_21025
CA264_21030: CA264_21030 - hypothetical protein, at 67,181 to 67,600
_21030
CA264_21035: CA264_21035 - mobilization protein, at 67,705 to 69,672
_21035
CA264_21040: CA264_21040 - transcriptional regulator, at 69,669 to 70,019
_21040
Position (kb)
67
68
69
70 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 66.771 kb on - strand, within CA264_21025 at 66.771 kb on - strand, within CA264_21025 at 66.819 kb on + strand, within CA264_21025 at 66.819 kb on + strand, within CA264_21025 at 66.819 kb on + strand, within CA264_21025 at 66.819 kb on + strand, within CA264_21025 at 66.820 kb on - strand, within CA264_21025 at 66.820 kb on - strand, within CA264_21025 at 66.822 kb on - strand, within CA264_21025 at 66.851 kb on - strand, within CA264_21025 at 66.857 kb on + strand, within CA264_21025 at 66.881 kb on + strand, within CA264_21025 at 67.114 kb on - strand at 67.141 kb on + strand at 67.142 kb on - strand at 67.176 kb on + strand at 67.181 kb on - strand at 67.209 kb on - strand at 67.293 kb on - strand, within CA264_21030 at 67.322 kb on + strand, within CA264_21030 at 67.325 kb on - strand, within CA264_21030 at 67.371 kb on - strand, within CA264_21030 at 67.455 kb on + strand, within CA264_21030 at 67.456 kb on - strand, within CA264_21030 at 67.456 kb on - strand, within CA264_21030 at 67.539 kb on + strand, within CA264_21030 at 67.540 kb on - strand, within CA264_21030 at 67.540 kb on - strand, within CA264_21030 at 67.668 kb on + strand at 67.668 kb on + strand at 67.668 kb on + strand at 67.676 kb on - strand at 67.695 kb on - strand at 67.704 kb on + strand at 67.755 kb on + strand at 67.756 kb on - strand at 67.768 kb on - strand at 67.781 kb on + strand at 67.782 kb on - strand at 67.782 kb on - strand at 67.782 kb on - strand at 67.782 kb on - strand at 67.782 kb on - strand at 67.798 kb on - strand at 67.812 kb on + strand at 67.812 kb on + strand at 67.813 kb on - strand at 67.816 kb on + strand at 67.816 kb on + strand at 67.817 kb on - strand at 67.845 kb on - strand at 67.845 kb on - strand at 67.861 kb on + strand at 67.861 kb on + strand at 67.874 kb on - strand at 67.874 kb on - strand at 67.874 kb on - strand at 67.874 kb on - strand at 67.965 kb on + strand, within CA264_21035 at 68.077 kb on + strand, within CA264_21035 at 68.077 kb on + strand, within CA264_21035 at 68.077 kb on + strand, within CA264_21035 at 68.117 kb on + strand, within CA264_21035 at 68.118 kb on - strand, within CA264_21035 at 68.118 kb on - strand, within CA264_21035 at 68.142 kb on + strand, within CA264_21035 at 68.143 kb on - strand, within CA264_21035 at 68.144 kb on + strand, within CA264_21035 at 68.145 kb on - strand, within CA264_21035 at 68.248 kb on + strand, within CA264_21035 at 68.248 kb on + strand, within CA264_21035 at 68.248 kb on + strand, within CA264_21035 at 68.248 kb on + strand, within CA264_21035 at 68.248 kb on + strand, within CA264_21035 at 68.249 kb on - strand, within CA264_21035 at 68.251 kb on + strand, within CA264_21035 at 68.251 kb on + strand, within CA264_21035 at 68.394 kb on + strand, within CA264_21035 at 68.394 kb on + strand, within CA264_21035 at 68.394 kb on + strand, within CA264_21035 at 68.413 kb on - strand, within CA264_21035 at 68.413 kb on - strand, within CA264_21035 at 68.440 kb on + strand, within CA264_21035 at 68.443 kb on + strand, within CA264_21035 at 68.449 kb on + strand, within CA264_21035 at 68.461 kb on - strand, within CA264_21035 at 68.554 kb on + strand, within CA264_21035 at 68.686 kb on + strand, within CA264_21035 at 68.735 kb on + strand, within CA264_21035 at 68.736 kb on - strand, within CA264_21035 at 68.749 kb on - strand, within CA264_21035 at 68.758 kb on + strand, within CA264_21035 at 68.758 kb on + strand, within CA264_21035 at 68.759 kb on - strand, within CA264_21035 at 68.830 kb on + strand, within CA264_21035 at 68.830 kb on + strand, within CA264_21035 at 68.830 kb on + strand, within CA264_21035 at 68.830 kb on + strand, within CA264_21035 at 68.831 kb on - strand, within CA264_21035 at 68.832 kb on + strand, within CA264_21035 at 68.832 kb on + strand, within CA264_21035 at 68.833 kb on - strand, within CA264_21035 at 68.883 kb on + strand, within CA264_21035 at 69.109 kb on - strand, within CA264_21035 at 69.115 kb on + strand, within CA264_21035 at 69.116 kb on - strand, within CA264_21035 at 69.116 kb on - strand, within CA264_21035 at 69.119 kb on + strand, within CA264_21035 at 69.119 kb on + strand, within CA264_21035 at 69.119 kb on + strand, within CA264_21035 at 69.120 kb on - strand, within CA264_21035 at 69.120 kb on - strand, within CA264_21035 at 69.164 kb on + strand, within CA264_21035 at 69.164 kb on + strand, within CA264_21035 at 69.164 kb on + strand, within CA264_21035 at 69.164 kb on + strand, within CA264_21035 at 69.165 kb on - strand, within CA264_21035 at 69.192 kb on - strand, within CA264_21035 at 69.257 kb on + strand, within CA264_21035 at 69.258 kb on - strand, within CA264_21035 at 69.279 kb on + strand, within CA264_21035 at 69.315 kb on + strand, within CA264_21035 at 69.361 kb on - strand, within CA264_21035 at 69.449 kb on + strand, within CA264_21035 at 69.449 kb on + strand, within CA264_21035 at 69.469 kb on + strand, within CA264_21035 at 69.469 kb on + strand, within CA264_21035 at 69.470 kb on - strand, within CA264_21035 at 69.481 kb on + strand at 69.481 kb on + strand at 69.530 kb on + strand at 69.550 kb on + strand at 69.631 kb on - strand at 69.662 kb on + strand at 69.669 kb on - strand at 69.676 kb on + strand at 69.682 kb on + strand at 69.778 kb on + strand, within CA264_21040 at 69.823 kb on + strand, within CA264_21040 at 69.823 kb on + strand, within CA264_21040 at 69.997 kb on + strand at 70.017 kb on + strand at 70.018 kb on - strand at 70.051 kb on - strand at 70.060 kb on + strand at 70.063 kb on + strand at 70.063 kb on + strand at 70.065 kb on + strand at 70.160 kb on - strand at 70.199 kb on - strand at 70.343 kb on + strand at 70.343 kb on + strand at 70.344 kb on - strand at 70.361 kb on - strand at 70.370 kb on + strand at 70.370 kb on + strand at 70.391 kb on + strand at 70.399 kb on + strand at 70.400 kb on - strand at 70.402 kb on - strand at 70.420 kb on - strand at 70.458 kb on - strand at 70.500 kb on + strand at 70.500 kb on + strand at 70.500 kb on + strand at 70.515 kb on + strand at 70.533 kb on - strand at 70.571 kb on - strand at 70.574 kb on - strand at 70.579 kb on + strand at 70.581 kb on + strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.585 kb on + strand at 70.585 kb on + strand at 70.586 kb on - strand at 70.586 kb on - strand at 70.586 kb on - strand at 70.587 kb on + strand at 70.587 kb on + strand at 70.587 kb on + strand at 70.588 kb on - strand at 70.588 kb on - strand at 70.631 kb on - strand at 70.631 kb on - strand at 70.634 kb on + strand at 70.635 kb on - strand at 70.635 kb on - strand at 70.638 kb on - strand at 70.638 kb on - strand at 70.641 kb on + strand at 70.641 kb on + strand at 70.642 kb on - strand at 70.671 kb on + strand at 70.671 kb on + strand at 70.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM remove 66,771 - CA264_21025 0.52 +0.7 66,771 - CA264_21025 0.52 -0.0 66,819 + CA264_21025 0.59 -0.4 66,819 + CA264_21025 0.59 -0.0 66,819 + CA264_21025 0.59 +0.8 66,819 + CA264_21025 0.59 +0.7 66,820 - CA264_21025 0.59 -0.9 66,820 - CA264_21025 0.59 -0.1 66,822 - CA264_21025 0.59 -0.3 66,851 - CA264_21025 0.63 +0.8 66,857 + CA264_21025 0.63 -2.5 66,881 + CA264_21025 0.66 +0.2 67,114 - +1.2 67,141 + +0.6 67,142 - +1.1 67,176 + +0.2 67,181 - -0.1 67,209 - +1.7 67,293 - CA264_21030 0.27 +1.2 67,322 + CA264_21030 0.34 +0.5 67,325 - CA264_21030 0.34 +0.0 67,371 - CA264_21030 0.45 +0.0 67,455 + CA264_21030 0.65 -0.1 67,456 - CA264_21030 0.65 -0.9 67,456 - CA264_21030 0.65 -0.4 67,539 + CA264_21030 0.85 -0.4 67,540 - CA264_21030 0.85 -0.3 67,540 - CA264_21030 0.85 -0.3 67,668 + -0.0 67,668 + +0.4 67,668 + +0.1 67,676 - +0.3 67,695 - -0.7 67,704 + +0.6 67,755 + +0.2 67,756 - +1.7 67,768 - +0.5 67,781 + +0.2 67,782 - +1.2 67,782 - +1.4 67,782 - +0.5 67,782 - -0.7 67,782 - +1.0 67,798 - -0.2 67,812 + +0.6 67,812 + +0.0 67,813 - +0.4 67,816 + -0.6 67,816 + +0.2 67,817 - -0.5 67,845 - -0.6 67,845 - -0.3 67,861 + +0.4 67,861 + +0.0 67,874 - +0.5 67,874 - -0.3 67,874 - +0.1 67,874 - +0.0 67,965 + CA264_21035 0.13 -1.4 68,077 + CA264_21035 0.19 +0.0 68,077 + CA264_21035 0.19 -0.0 68,077 + CA264_21035 0.19 -0.2 68,117 + CA264_21035 0.21 -0.4 68,118 - CA264_21035 0.21 +0.0 68,118 - CA264_21035 0.21 +0.4 68,142 + CA264_21035 0.22 -0.8 68,143 - CA264_21035 0.22 +0.4 68,144 + CA264_21035 0.22 +1.4 68,145 - CA264_21035 0.22 +0.1 68,248 + CA264_21035 0.28 +1.1 68,248 + CA264_21035 0.28 -0.2 68,248 + CA264_21035 0.28 -0.1 68,248 + CA264_21035 0.28 -0.7 68,248 + CA264_21035 0.28 +2.3 68,249 - CA264_21035 0.28 -0.8 68,251 + CA264_21035 0.28 +0.1 68,251 + CA264_21035 0.28 +0.3 68,394 + CA264_21035 0.35 +0.0 68,394 + CA264_21035 0.35 +0.1 68,394 + CA264_21035 0.35 +0.1 68,413 - CA264_21035 0.36 -0.4 68,413 - CA264_21035 0.36 -0.6 68,440 + CA264_21035 0.37 +1.1 68,443 + CA264_21035 0.38 -2.1 68,449 + CA264_21035 0.38 -0.6 68,461 - CA264_21035 0.38 -0.4 68,554 + CA264_21035 0.43 +1.6 68,686 + CA264_21035 0.50 +0.1 68,735 + CA264_21035 0.52 -0.4 68,736 - CA264_21035 0.52 -0.0 68,749 - CA264_21035 0.53 +0.1 68,758 + CA264_21035 0.54 +0.3 68,758 + CA264_21035 0.54 +0.3 68,759 - CA264_21035 0.54 -0.1 68,830 + CA264_21035 0.57 +0.5 68,830 + CA264_21035 0.57 +0.4 68,830 + CA264_21035 0.57 -0.1 68,830 + CA264_21035 0.57 +0.1 68,831 - CA264_21035 0.57 +0.1 68,832 + CA264_21035 0.57 +0.3 68,832 + CA264_21035 0.57 +0.8 68,833 - CA264_21035 0.57 +0.2 68,883 + CA264_21035 0.60 +0.4 69,109 - CA264_21035 0.71 -0.5 69,115 + CA264_21035 0.72 +0.2 69,116 - CA264_21035 0.72 -0.0 69,116 - CA264_21035 0.72 +0.7 69,119 + CA264_21035 0.72 +0.7 69,119 + CA264_21035 0.72 -1.2 69,119 + CA264_21035 0.72 +0.1 69,120 - CA264_21035 0.72 +0.2 69,120 - CA264_21035 0.72 -1.1 69,164 + CA264_21035 0.74 +0.8 69,164 + CA264_21035 0.74 +0.9 69,164 + CA264_21035 0.74 +0.7 69,164 + CA264_21035 0.74 +0.4 69,165 - CA264_21035 0.74 +1.9 69,192 - CA264_21035 0.76 -0.1 69,257 + CA264_21035 0.79 +1.0 69,258 - CA264_21035 0.79 +0.1 69,279 + CA264_21035 0.80 -0.3 69,315 + CA264_21035 0.82 -0.3 69,361 - CA264_21035 0.84 +0.7 69,449 + CA264_21035 0.89 +0.3 69,449 + CA264_21035 0.89 +0.4 69,469 + CA264_21035 0.90 -0.1 69,469 + CA264_21035 0.90 +0.3 69,470 - CA264_21035 0.90 -0.5 69,481 + +0.4 69,481 + -0.5 69,530 + -0.3 69,550 + -0.3 69,631 - +0.0 69,662 + -0.2 69,669 - -0.4 69,676 + +1.2 69,682 + -1.2 69,778 + CA264_21040 0.31 +0.7 69,823 + CA264_21040 0.44 +0.3 69,823 + CA264_21040 0.44 -0.2 69,997 + -1.8 70,017 + +0.7 70,018 - +0.4 70,051 - -0.4 70,060 + +1.3 70,063 + +0.0 70,063 + +0.1 70,065 + +0.5 70,160 - +0.4 70,199 - -0.2 70,343 + -0.1 70,343 + +0.9 70,344 - -1.8 70,361 - +0.1 70,370 + -0.6 70,370 + +1.2 70,391 + +0.9 70,399 + +0.1 70,400 - +0.5 70,402 - +0.0 70,420 - -0.3 70,458 - -0.7 70,500 + +0.3 70,500 + +2.1 70,500 + +0.4 70,515 + +0.3 70,533 - +0.8 70,571 - -0.1 70,574 - +0.1 70,579 + -0.3 70,581 + +0.7 70,582 - -1.3 70,582 - -0.9 70,582 - +0.2 70,585 + +0.2 70,585 + -0.3 70,586 - -0.6 70,586 - -0.6 70,586 - -0.5 70,587 + +0.4 70,587 + +0.1 70,587 + -1.4 70,588 - -0.1 70,588 - -0.0 70,631 - +1.4 70,631 - +0.1 70,634 + +0.9 70,635 - -0.4 70,635 - -0.7 70,638 - +0.4 70,638 - +0.3 70,641 + +0.6 70,641 + +0.8 70,642 - -0.2 70,671 + +0.8 70,671 + +0.8 70,672 - +0.0
Or see this region's nucleotide sequence