Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17715

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17710 and CA264_17715 are separated by 242 nucleotidesCA264_17715 and CA264_17720 are separated by 66 nucleotides CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814 _17710 CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557 _17715 CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823 _17720 Position (kb) 4122 4123Strain fitness (log2 ratio) -2 -1 0 1at 4121.068 kb on - strandat 4121.090 kb on + strandat 4121.090 kb on + strandat 4121.091 kb on - strandat 4121.091 kb on - strandat 4121.093 kb on + strandat 4121.144 kb on + strandat 4121.145 kb on - strandat 4121.149 kb on - strandat 4121.149 kb on - strandat 4121.184 kb on - strand, within CA264_17710at 4121.189 kb on + strand, within CA264_17710at 4121.190 kb on - strand, within CA264_17710at 4121.220 kb on + strand, within CA264_17710at 4121.221 kb on - strand, within CA264_17710at 4121.224 kb on + strand, within CA264_17710at 4121.224 kb on + strand, within CA264_17710at 4121.225 kb on - strand, within CA264_17710at 4121.235 kb on - strand, within CA264_17710at 4121.239 kb on - strand, within CA264_17710at 4121.260 kb on + strand, within CA264_17710at 4121.297 kb on - strand, within CA264_17710at 4121.297 kb on - strand, within CA264_17710at 4121.298 kb on + strand, within CA264_17710at 4121.299 kb on - strand, within CA264_17710at 4121.316 kb on - strand, within CA264_17710at 4121.381 kb on - strand, within CA264_17710at 4121.458 kb on + strand, within CA264_17710at 4121.459 kb on - strand, within CA264_17710at 4121.459 kb on - strand, within CA264_17710at 4121.476 kb on + strand, within CA264_17710at 4121.476 kb on + strand, within CA264_17710at 4121.704 kb on + strand, within CA264_17710at 4121.704 kb on + strand, within CA264_17710at 4121.705 kb on - strand, within CA264_17710at 4121.710 kb on + strand, within CA264_17710at 4121.711 kb on - strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.717 kb on - strand, within CA264_17710at 4121.744 kb on - strandat 4121.744 kb on - strandat 4121.750 kb on - strandat 4121.883 kb on + strandat 4121.888 kb on + strandat 4121.981 kb on - strandat 4122.021 kb on + strandat 4122.552 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.558 kb on - strandat 4122.558 kb on - strandat 4122.572 kb on - strandat 4122.582 kb on - strandat 4122.595 kb on - strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.637 kb on - strandat 4122.639 kb on - strandat 4122.639 kb on - strandat 4122.640 kb on + strandat 4122.640 kb on + strandat 4122.641 kb on - strandat 4122.641 kb on - strandat 4122.648 kb on - strandat 4122.649 kb on + strandat 4122.649 kb on + strandat 4122.650 kb on - strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.654 kb on - strandat 4122.654 kb on - strandat 4122.823 kb on + strand, within CA264_17720at 4122.824 kb on - strand, within CA264_17720at 4122.875 kb on + strand, within CA264_17720at 4122.911 kb on + strand, within CA264_17720at 4122.911 kb on + strand, within CA264_17720at 4122.932 kb on + strand, within CA264_17720at 4122.955 kb on + strand, within CA264_17720at 4122.956 kb on - strand, within CA264_17720at 4122.957 kb on + strand, within CA264_17720at 4122.981 kb on - strand, within CA264_17720at 4123.023 kb on + strand, within CA264_17720at 4123.045 kb on - strand, within CA264_17720at 4123.071 kb on - strand, within CA264_17720at 4123.080 kb on - strand, within CA264_17720at 4123.089 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.193 kb on - strand, within CA264_17720at 4123.197 kb on + strand, within CA264_17720at 4123.197 kb on + strand, within CA264_17720at 4123.388 kb on - strand, within CA264_17720at 4123.443 kb on - strand, within CA264_17720at 4123.443 kb on - strand, within CA264_17720at 4123.490 kb on - strand, within CA264_17720at 4123.555 kb on + strand, within CA264_17720at 4123.556 kb on - strand, within CA264_17720

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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4,121,068 - +1.2
4,121,090 + +0.3
4,121,090 + -0.1
4,121,091 - +1.1
4,121,091 - -0.5
4,121,093 + -0.2
4,121,144 + +1.1
4,121,145 - +0.7
4,121,149 - -0.2
4,121,149 - +0.6
4,121,184 - CA264_17710 0.14 +0.8
4,121,189 + CA264_17710 0.15 -0.5
4,121,190 - CA264_17710 0.15 -0.8
4,121,220 + CA264_17710 0.19 -1.3
4,121,221 - CA264_17710 0.20 +0.1
4,121,224 + CA264_17710 0.20 +0.1
4,121,224 + CA264_17710 0.20 -0.6
4,121,225 - CA264_17710 0.20 -0.5
4,121,235 - CA264_17710 0.21 +1.0
4,121,239 - CA264_17710 0.22 +0.3
4,121,260 + CA264_17710 0.25 -0.4
4,121,297 - CA264_17710 0.30 -0.4
4,121,297 - CA264_17710 0.30 -0.3
4,121,298 + CA264_17710 0.30 -0.6
4,121,299 - CA264_17710 0.30 -0.4
4,121,316 - CA264_17710 0.32 +0.1
4,121,381 - CA264_17710 0.41 -0.7
4,121,458 + CA264_17710 0.52 +0.2
4,121,459 - CA264_17710 0.52 +0.6
4,121,459 - CA264_17710 0.52 -2.3
4,121,476 + CA264_17710 0.54 +0.3
4,121,476 + CA264_17710 0.54 +0.3
4,121,704 + CA264_17710 0.85 +0.1
4,121,704 + CA264_17710 0.85 -1.8
4,121,705 - CA264_17710 0.85 +0.1
4,121,710 + CA264_17710 0.86 -0.1
4,121,711 - CA264_17710 0.86 +0.5
4,121,716 + CA264_17710 0.87 +0.2
4,121,716 + CA264_17710 0.87 +0.1
4,121,717 - CA264_17710 0.87 +1.5
4,121,744 - -0.3
4,121,744 - -0.1
4,121,750 - +0.4
4,121,883 + -0.4
4,121,888 + -0.1
4,121,981 - +1.4
4,122,021 + -0.0
4,122,552 + +1.4
4,122,557 + -0.1
4,122,557 + -0.1
4,122,557 + +1.5
4,122,558 - +0.6
4,122,558 - -0.2
4,122,572 - -0.1
4,122,582 - -0.1
4,122,595 - -1.3
4,122,629 + +0.3
4,122,629 + -0.3
4,122,629 + -0.3
4,122,636 + +0.8
4,122,636 + -0.5
4,122,636 + +1.2
4,122,637 - +1.4
4,122,639 - -0.0
4,122,639 - -0.8
4,122,640 + -0.2
4,122,640 + -0.2
4,122,641 - -1.9
4,122,641 - -0.0
4,122,648 - +0.7
4,122,649 + +0.4
4,122,649 + -0.4
4,122,650 - +1.1
4,122,653 + +0.7
4,122,653 + +1.2
4,122,653 + +0.5
4,122,654 - +1.2
4,122,654 - +0.1
4,122,823 + CA264_17720 0.17 +0.4
4,122,824 - CA264_17720 0.17 +0.0
4,122,875 + CA264_17720 0.21 -1.1
4,122,911 + CA264_17720 0.24 +0.3
4,122,911 + CA264_17720 0.24 -0.4
4,122,932 + CA264_17720 0.26 -0.5
4,122,955 + CA264_17720 0.28 +0.2
4,122,956 - CA264_17720 0.28 +0.0
4,122,957 + CA264_17720 0.28 -0.0
4,122,981 - CA264_17720 0.30 -0.7
4,123,023 + CA264_17720 0.33 -0.4
4,123,045 - CA264_17720 0.35 +0.1
4,123,071 - CA264_17720 0.37 +0.2
4,123,080 - CA264_17720 0.38 -0.1
4,123,089 - CA264_17720 0.39 +0.4
4,123,182 - CA264_17720 0.47 +0.2
4,123,182 - CA264_17720 0.47 -1.2
4,123,182 - CA264_17720 0.47 +0.1
4,123,193 - CA264_17720 0.47 +0.1
4,123,197 + CA264_17720 0.48 -0.1
4,123,197 + CA264_17720 0.48 +0.0
4,123,388 - CA264_17720 0.64 -0.1
4,123,443 - CA264_17720 0.68 -0.1
4,123,443 - CA264_17720 0.68 +0.1
4,123,490 - CA264_17720 0.72 +0.4
4,123,555 + CA264_17720 0.78 +1.7
4,123,556 - CA264_17720 0.78 -1.3

Or see this region's nucleotide sequence