Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15680

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15675 and CA264_15680 are separated by 8 nucleotidesCA264_15680 and CA264_15685 are separated by 3 nucleotides CA264_15675: CA264_15675 - signal recognition particle-docking protein FtsY, at 3,659,657 to 3,660,616 _15675 CA264_15680: CA264_15680 - hypothetical protein, at 3,660,625 to 3,661,167 _15680 CA264_15685: CA264_15685 - 30S ribosomal protein S12 methylthiotransferase RimO, at 3,661,171 to 3,662,484 _15685 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3659.641 kb on + strandat 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.893 kb on - strand, within CA264_15680at 3660.899 kb on - strand, within CA264_15680at 3660.963 kb on + strand, within CA264_15680at 3661.031 kb on - strand, within CA264_15680at 3661.109 kb on + strand, within CA264_15680at 3661.110 kb on - strand, within CA264_15680at 3661.151 kb on - strandat 3661.162 kb on + strandat 3661.163 kb on - strandat 3661.165 kb on + strandat 3661.179 kb on - strandat 3661.197 kb on + strandat 3661.208 kb on + strandat 3661.209 kb on - strandat 3661.212 kb on + strandat 3661.212 kb on + strandat 3661.213 kb on - strandat 3661.213 kb on - strandat 3661.315 kb on - strand, within CA264_15685at 3661.416 kb on - strand, within CA264_15685at 3661.426 kb on + strand, within CA264_15685at 3661.426 kb on + strand, within CA264_15685at 3661.427 kb on - strand, within CA264_15685at 3661.430 kb on + strand, within CA264_15685at 3661.453 kb on + strand, within CA264_15685at 3661.454 kb on - strand, within CA264_15685at 3661.495 kb on + strand, within CA264_15685at 3661.600 kb on + strand, within CA264_15685at 3661.600 kb on + strand, within CA264_15685at 3661.601 kb on - strand, within CA264_15685at 3661.605 kb on + strand, within CA264_15685at 3661.606 kb on - strand, within CA264_15685at 3661.673 kb on + strand, within CA264_15685at 3661.673 kb on + strand, within CA264_15685at 3661.674 kb on - strand, within CA264_15685at 3661.760 kb on + strand, within CA264_15685at 3661.760 kb on + strand, within CA264_15685at 3661.761 kb on - strand, within CA264_15685at 3661.765 kb on + strand, within CA264_15685at 3661.765 kb on + strand, within CA264_15685at 3661.765 kb on + strand, within CA264_15685at 3661.765 kb on + strand, within CA264_15685at 3661.766 kb on - strand, within CA264_15685at 3661.766 kb on - strand, within CA264_15685at 3661.768 kb on + strand, within CA264_15685at 3661.768 kb on + strand, within CA264_15685at 3661.769 kb on - strand, within CA264_15685at 3661.795 kb on - strand, within CA264_15685at 3661.858 kb on + strand, within CA264_15685at 3661.858 kb on + strand, within CA264_15685at 3661.858 kb on + strand, within CA264_15685at 3661.858 kb on + strand, within CA264_15685at 3661.859 kb on - strand, within CA264_15685at 3661.864 kb on + strand, within CA264_15685at 3662.052 kb on - strand, within CA264_15685at 3662.063 kb on + strand, within CA264_15685at 3662.063 kb on + strand, within CA264_15685at 3662.064 kb on - strand, within CA264_15685at 3662.111 kb on - strand, within CA264_15685at 3662.111 kb on - strand, within CA264_15685at 3662.154 kb on + strand, within CA264_15685at 3662.154 kb on + strand, within CA264_15685at 3662.155 kb on - strand, within CA264_15685at 3662.155 kb on - strand, within CA264_15685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,659,641 + -0.3
3,660,892 + CA264_15680 0.49 +0.8
3,660,892 + CA264_15680 0.49 +2.0
3,660,892 + CA264_15680 0.49 -1.1
3,660,892 + CA264_15680 0.49 +0.7
3,660,893 - CA264_15680 0.49 +0.5
3,660,899 - CA264_15680 0.50 +1.1
3,660,963 + CA264_15680 0.62 -0.1
3,661,031 - CA264_15680 0.75 -0.4
3,661,109 + CA264_15680 0.89 -0.2
3,661,110 - CA264_15680 0.89 -0.1
3,661,151 - -0.3
3,661,162 + +0.1
3,661,163 - -0.3
3,661,165 + +0.1
3,661,179 - +0.8
3,661,197 + -0.3
3,661,208 + -0.1
3,661,209 - +0.1
3,661,212 + -1.5
3,661,212 + +0.1
3,661,213 - +0.2
3,661,213 - +0.1
3,661,315 - CA264_15685 0.11 -0.8
3,661,416 - CA264_15685 0.19 -0.2
3,661,426 + CA264_15685 0.19 -0.0
3,661,426 + CA264_15685 0.19 -0.3
3,661,427 - CA264_15685 0.19 -0.4
3,661,430 + CA264_15685 0.20 -0.9
3,661,453 + CA264_15685 0.21 -0.5
3,661,454 - CA264_15685 0.22 +1.8
3,661,495 + CA264_15685 0.25 -1.1
3,661,600 + CA264_15685 0.33 -1.5
3,661,600 + CA264_15685 0.33 -0.1
3,661,601 - CA264_15685 0.33 -0.5
3,661,605 + CA264_15685 0.33 -0.5
3,661,606 - CA264_15685 0.33 -0.4
3,661,673 + CA264_15685 0.38 +0.1
3,661,673 + CA264_15685 0.38 +0.2
3,661,674 - CA264_15685 0.38 +0.8
3,661,760 + CA264_15685 0.45 -0.7
3,661,760 + CA264_15685 0.45 -0.9
3,661,761 - CA264_15685 0.45 +0.9
3,661,765 + CA264_15685 0.45 +0.1
3,661,765 + CA264_15685 0.45 -0.7
3,661,765 + CA264_15685 0.45 -0.5
3,661,765 + CA264_15685 0.45 -0.6
3,661,766 - CA264_15685 0.45 +1.1
3,661,766 - CA264_15685 0.45 +0.1
3,661,768 + CA264_15685 0.45 -0.4
3,661,768 + CA264_15685 0.45 +0.4
3,661,769 - CA264_15685 0.46 -0.5
3,661,795 - CA264_15685 0.47 -0.1
3,661,858 + CA264_15685 0.52 -1.3
3,661,858 + CA264_15685 0.52 -3.0
3,661,858 + CA264_15685 0.52 -1.0
3,661,858 + CA264_15685 0.52 -2.1
3,661,859 - CA264_15685 0.52 -0.4
3,661,864 + CA264_15685 0.53 +0.2
3,662,052 - CA264_15685 0.67 +0.4
3,662,063 + CA264_15685 0.68 -0.0
3,662,063 + CA264_15685 0.68 -0.2
3,662,064 - CA264_15685 0.68 +0.2
3,662,111 - CA264_15685 0.72 -0.3
3,662,111 - CA264_15685 0.72 -0.8
3,662,154 + CA264_15685 0.75 +0.0
3,662,154 + CA264_15685 0.75 +0.1
3,662,155 - CA264_15685 0.75 -0.1
3,662,155 - CA264_15685 0.75 +0.4

Or see this region's nucleotide sequence