Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15155

Experiment: m.b. Cobalt chloride 0.15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15145 and CA264_15150 are separated by 9 nucleotidesCA264_15150 and CA264_15155 overlap by 92 nucleotidesCA264_15155 and CA264_15160 are separated by 169 nucleotides CA264_15145: CA264_15145 - phosphoglucosamine mutase, at 3,551,972 to 3,553,363 _15145 CA264_15150: CA264_15150 - hypothetical protein, at 3,553,373 to 3,553,627 _15150 CA264_15155: CA264_15155 - hypothetical protein, at 3,553,536 to 3,553,796 _15155 CA264_15160: CA264_15160 - nucleoside triphosphate pyrophosphohydrolase, at 3,553,966 to 3,554,775 _15160 Position (kb) 3553 3554Strain fitness (log2 ratio) -3 -2 -1 0 1at 3553.370 kb on + strandat 3553.371 kb on - strandat 3553.371 kb on - strandat 3553.371 kb on - strandat 3553.372 kb on + strandat 3553.372 kb on + strandat 3553.403 kb on - strand, within CA264_15150at 3553.406 kb on + strand, within CA264_15150at 3553.408 kb on + strand, within CA264_15150at 3553.409 kb on - strand, within CA264_15150at 3553.409 kb on - strand, within CA264_15150at 3553.422 kb on + strand, within CA264_15150at 3553.537 kb on + strandat 3553.626 kb on - strandat 3553.741 kb on - strand, within CA264_15155at 3553.796 kb on + strandat 3553.800 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.806 kb on + strandat 3553.806 kb on + strandat 3553.806 kb on + strandat 3553.808 kb on + strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.908 kb on - strandat 3553.938 kb on - strandat 3553.942 kb on + strandat 3554.119 kb on + strand, within CA264_15160at 3554.120 kb on - strand, within CA264_15160at 3554.120 kb on - strand, within CA264_15160at 3554.162 kb on + strand, within CA264_15160at 3554.184 kb on + strand, within CA264_15160at 3554.184 kb on + strand, within CA264_15160at 3554.185 kb on - strand, within CA264_15160at 3554.185 kb on - strand, within CA264_15160at 3554.415 kb on - strand, within CA264_15160at 3554.430 kb on - strand, within CA264_15160at 3554.505 kb on - strand, within CA264_15160at 3554.505 kb on - strand, within CA264_15160at 3554.526 kb on + strand, within CA264_15160at 3554.527 kb on - strand, within CA264_15160at 3554.531 kb on + strand, within CA264_15160at 3554.790 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
remove
3,553,370 + -0.7
3,553,371 - -0.7
3,553,371 - -1.0
3,553,371 - -0.3
3,553,372 + +0.2
3,553,372 + -0.0
3,553,403 - CA264_15150 0.12 +0.0
3,553,406 + CA264_15150 0.13 -1.0
3,553,408 + CA264_15150 0.14 -0.0
3,553,409 - CA264_15150 0.14 -1.1
3,553,409 - CA264_15150 0.14 -1.5
3,553,422 + CA264_15150 0.19 +1.6
3,553,537 + -1.3
3,553,626 - -0.6
3,553,741 - CA264_15155 0.79 -0.5
3,553,796 + -0.1
3,553,800 - -1.1
3,553,802 - -1.2
3,553,802 - +0.2
3,553,802 - -0.1
3,553,802 - -0.8
3,553,802 - -1.6
3,553,806 + -0.4
3,553,806 + -0.8
3,553,806 + -0.6
3,553,808 + +0.3
3,553,809 - -1.1
3,553,809 - -0.5
3,553,809 - -0.1
3,553,809 - +0.3
3,553,908 - -1.9
3,553,938 - -0.6
3,553,942 + +0.3
3,554,119 + CA264_15160 0.19 -1.0
3,554,120 - CA264_15160 0.19 -3.6
3,554,120 - CA264_15160 0.19 -0.6
3,554,162 + CA264_15160 0.24 -1.8
3,554,184 + CA264_15160 0.27 +1.3
3,554,184 + CA264_15160 0.27 -2.4
3,554,185 - CA264_15160 0.27 +0.1
3,554,185 - CA264_15160 0.27 +0.7
3,554,415 - CA264_15160 0.55 -1.6
3,554,430 - CA264_15160 0.57 -1.2
3,554,505 - CA264_15160 0.67 -1.5
3,554,505 - CA264_15160 0.67 -0.5
3,554,526 + CA264_15160 0.69 +0.4
3,554,527 - CA264_15160 0.69 -0.3
3,554,531 + CA264_15160 0.70 -0.5
3,554,790 + +1.2

Or see this region's nucleotide sequence