Experiment: m.b. Cobalt chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13995 and CA264_14000 are separated by 35 nucleotides CA264_14000 and CA264_14005 are separated by 66 nucleotides
CA264_13995: CA264_13995 - carbohydrate kinase, at 3,275,969 to 3,277,453
_13995
CA264_14000: CA264_14000 - xylose isomerase, at 3,277,489 to 3,278,820
_14000
CA264_14005: CA264_14005 - D-xylose transporter XylE, at 3,278,887 to 3,280,299
_14005
Position (kb)
3277
3278
3279 Strain fitness (log2 ratio)
-1
0
1 at 3276.564 kb on - strand, within CA264_13995 at 3276.566 kb on + strand, within CA264_13995 at 3276.569 kb on - strand, within CA264_13995 at 3276.797 kb on + strand, within CA264_13995 at 3276.798 kb on - strand, within CA264_13995 at 3276.938 kb on + strand, within CA264_13995 at 3277.066 kb on - strand, within CA264_13995 at 3277.463 kb on + strand at 3277.478 kb on + strand at 3277.520 kb on - strand at 3277.542 kb on + strand at 3277.543 kb on - strand at 3277.788 kb on - strand, within CA264_14000 at 3277.798 kb on + strand, within CA264_14000 at 3277.798 kb on + strand, within CA264_14000 at 3277.801 kb on + strand, within CA264_14000 at 3277.802 kb on - strand, within CA264_14000 at 3277.883 kb on - strand, within CA264_14000 at 3277.958 kb on - strand, within CA264_14000 at 3278.063 kb on - strand, within CA264_14000 at 3278.063 kb on - strand, within CA264_14000 at 3278.089 kb on + strand, within CA264_14000 at 3278.090 kb on - strand, within CA264_14000 at 3278.164 kb on + strand, within CA264_14000 at 3278.165 kb on - strand, within CA264_14000 at 3278.279 kb on - strand, within CA264_14000 at 3278.570 kb on - strand, within CA264_14000 at 3278.768 kb on + strand at 3278.769 kb on - strand at 3278.789 kb on - strand at 3278.812 kb on + strand at 3278.812 kb on + strand at 3278.818 kb on + strand at 3278.818 kb on + strand at 3278.819 kb on - strand at 3278.834 kb on + strand at 3278.839 kb on + strand at 3278.900 kb on - strand at 3279.103 kb on - strand, within CA264_14005 at 3279.201 kb on - strand, within CA264_14005 at 3279.228 kb on + strand, within CA264_14005 at 3279.244 kb on + strand, within CA264_14005 at 3279.245 kb on - strand, within CA264_14005 at 3279.245 kb on - strand, within CA264_14005 at 3279.343 kb on + strand, within CA264_14005 at 3279.343 kb on + strand, within CA264_14005 at 3279.380 kb on + strand, within CA264_14005 at 3279.681 kb on - strand, within CA264_14005 at 3279.697 kb on + strand, within CA264_14005 at 3279.697 kb on + strand, within CA264_14005 at 3279.698 kb on - strand, within CA264_14005 at 3279.698 kb on - strand, within CA264_14005 at 3279.803 kb on + strand, within CA264_14005 at 3279.803 kb on + strand, within CA264_14005 at 3279.803 kb on + strand, within CA264_14005 at 3279.803 kb on + strand, within CA264_14005 at 3279.804 kb on - strand, within CA264_14005 at 3279.804 kb on - strand, within CA264_14005 at 3279.808 kb on - strand, within CA264_14005 at 3279.808 kb on - strand, within CA264_14005
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM remove 3,276,564 - CA264_13995 0.40 -0.7 3,276,566 + CA264_13995 0.40 +0.3 3,276,569 - CA264_13995 0.40 +0.1 3,276,797 + CA264_13995 0.56 +0.2 3,276,798 - CA264_13995 0.56 -0.3 3,276,938 + CA264_13995 0.65 +0.9 3,277,066 - CA264_13995 0.74 -1.4 3,277,463 + -0.9 3,277,478 + -1.2 3,277,520 - -0.2 3,277,542 + +0.2 3,277,543 - -0.1 3,277,788 - CA264_14000 0.22 +0.6 3,277,798 + CA264_14000 0.23 -0.2 3,277,798 + CA264_14000 0.23 -0.5 3,277,801 + CA264_14000 0.23 -0.5 3,277,802 - CA264_14000 0.23 -0.1 3,277,883 - CA264_14000 0.30 +0.3 3,277,958 - CA264_14000 0.35 +0.3 3,278,063 - CA264_14000 0.43 +0.5 3,278,063 - CA264_14000 0.43 +0.0 3,278,089 + CA264_14000 0.45 -0.5 3,278,090 - CA264_14000 0.45 +0.7 3,278,164 + CA264_14000 0.51 +0.5 3,278,165 - CA264_14000 0.51 +1.4 3,278,279 - CA264_14000 0.59 -0.1 3,278,570 - CA264_14000 0.81 -0.2 3,278,768 + -0.3 3,278,769 - +1.4 3,278,789 - +0.4 3,278,812 + -0.2 3,278,812 + +0.9 3,278,818 + -1.6 3,278,818 + -0.3 3,278,819 - -0.4 3,278,834 + +0.0 3,278,839 + -0.2 3,278,900 - +0.4 3,279,103 - CA264_14005 0.15 +0.1 3,279,201 - CA264_14005 0.22 +0.7 3,279,228 + CA264_14005 0.24 +1.7 3,279,244 + CA264_14005 0.25 +0.7 3,279,245 - CA264_14005 0.25 +0.0 3,279,245 - CA264_14005 0.25 -0.2 3,279,343 + CA264_14005 0.32 -0.0 3,279,343 + CA264_14005 0.32 -0.6 3,279,380 + CA264_14005 0.35 +0.3 3,279,681 - CA264_14005 0.56 +0.8 3,279,697 + CA264_14005 0.57 +0.7 3,279,697 + CA264_14005 0.57 -0.3 3,279,698 - CA264_14005 0.57 +0.2 3,279,698 - CA264_14005 0.57 +0.2 3,279,803 + CA264_14005 0.65 +1.4 3,279,803 + CA264_14005 0.65 +0.1 3,279,803 + CA264_14005 0.65 +0.2 3,279,803 + CA264_14005 0.65 +0.1 3,279,804 - CA264_14005 0.65 +0.3 3,279,804 - CA264_14005 0.65 -0.0 3,279,808 - CA264_14005 0.65 +0.2 3,279,808 - CA264_14005 0.65 -0.9
Or see this region's nucleotide sequence